BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316534
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 | ch... 2056 0.0
> AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 |
chr1:28561281-28564076 FORWARD LENGTH=1491
Length=1491
Score = 2056 bits (1113), Expect = 0.0
Identities = 1200/1243 (97%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 1 ATGGGCTACCATAACAATGTCTTTGATGAATGCAACGACCAAACTGATATCGGTCGAGTT 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 88 ATGGGCTACTATAACAATGTCTTTGATGAATGCAACGACCAAACTGATATCGGTCGGGTT 147
Query 61 CTACGCGATGGAAGGGAAGTCATTCTCCAGGCATATAACTGGGAATCTCATAAATATGAT 120
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 148 ATACGCGATGGAAGGGAAGTCATTCTCCAAGCATATAATTGGGAATCTCATAAATATGAT 207
Query 121 TGGTGGAGAAACTTGGACGGAAAAGTTCCCGACATTGCGAAATCTGGCTTTACTTCTGCA 180
||||||||||||||||| || |||||||| ||||| |||||||| |||||||||||||||
Sbjct 208 TGGTGGAGAAACTTGGATGGTAAAGTTCCTGACATCGCGAAATCCGGCTTTACTTCTGCA 267
Query 181 TGGTTGCCACCACCATCTCAGTCTCTTGCACCAGAAGGTTACCTTCCACAGGACCTTTAT 240
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 268 TGGTTGCCACCACCATCTCAGTCTCTTGCACCGGAAGGTTATCTTCCACAGGACCTTTAT 327
Query 241 TCACTAAACTCAGCATATGGCTCTGAGCATCTTTTGAAATCCTTACTTCGTAAGATGAAA 300
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 328 TCACTAAACTCAGCATATGGCTCTGAGCATCTATTGAAATCCTTACTGCGCAAGATGAAA 387
Query 301 CAATACAAAGTTAGAGCTATGGCTGATATAGTCATCAATCATCGTGTTGGGACAACGAGA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 388 CAATACAAAGTTAGAGCTATGGCTGATATAGTCATCAATCATCGTGTTGGGACAACTAGA 447
Query 361 GGACATGGTGGAATGTATAACCGTTATGATGGGATTTCGTTACCGTGGGATGAACACGCT 420
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 448 GGACATGGTGGAATGTATAACCGTTATGATGGAATTTCATTACCGTGGGATGAACACGCC 507
Query 421 GTGACTTCTTGTACCGGAGGACTGGGTAACCGAAGCACAGGGGATAATTTCAATGGAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GTGACTTCTTGTACCGGAGGACTGGGTAACCGAAGCACAGGGGATAATTTCAATGGAGTT 567
Query 481 CCAAATGTTGATCACACTCAGCATTTTGTTAGGAAAGATATAATCGGGTGGCTTCGTTGG 540
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 568 CCAAATGTTGATCACACTCAGCATTTTGTTAGGAAAGATATAATTGGATGGCTTCGTTGG 627
Query 541 CTGCGCAACACCGTCGGGTTTCAAGATTTCCGTTTTGACTTTGCTAGGGGTTATTCAGCA 600
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTACGCAACACCGTCGGGTTTCAAGATTTCCGTTTTGACTTTGCTAGGGGTTATTCAGCA 687
Query 601 AACTATGTGAAGGAATACATTGGAGCAGCAAAACCGTTATTCTCGGTTGGAGAATGTTGG 660
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 688 AACTATGTGAAGGAATACATTGGCGCAGCGAAACCATTATTCTCGGTTGGAGAATGTTGG 747
Query 661 GATTCTTGCAATTACAATGGCCATGGTCTAGACTATAATCAAGATAGCCATAGACAGCGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GATTCTTGCAATTACAATGGCCATGGTCTAGACTATAATCAAGATAGCCATAGACAGCGT 807
Query 721 ATAATCAGTTGGATCGATGCCACGGGACAGATCTCTGCTGCATTTGACTTCACAACTAAA 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 808 ATAATCAGTTGGATCGATGCGACGGGACAGATCTCTGCTGCATTTGACTTCACAACTAAA 867
Query 781 GGAATTCTGCAGGAAGCCGTAAAGGGTCAGTATTGGCGTTTATGTGATGCCCAAGGGAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GGAATTCTGCAGGAAGCCGTAAAGGGTCAGTATTGGCGTTTATGTGATGCCCAAGGGAAG 927
Query 841 CCACCTGGTGTAATGGGATGGTGGCCTTCAAGAGCTGTCACGTTCCTTGATAACCATGAC 900
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 928 CCACCGGGTGTAATGGGATGGTGGCCTTCAAGAGCTGTCACATTCCTTGATAACCATGAC 987
Query 901 ACTGGCTCTACTCAGGCTCATTGGCCGTTCCCTTCACACCACATTATGGAGGGCTATGCA 960
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 988 ACTGGCTCTACTCAGGCTCATTGGCCGTTCCCTTCACACCACGTTATGGAGGGCTATGCA 1047
Query 961 TATATACTTACTCATCCCGGCATTCCCTGTGTGTTCTACGATCATTTTTACGACTGGGGA 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1048 TATATACTTACTCATCCCGGCATTCCCTGTGTGTTCTACGATCACTTTTACGATTGGGGA 1107
Query 1021 AGCTCGATTCATGACCAGATTGTCAAACTGATTGAGATTAGGAGGCGACAAGATATCCAC 1080
||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1108 AGCTCAATACATGATCAGATTGTCAAACTGATTGACATTAGGAGGCGACAAGATATCCAC 1167
Query 1081 AGTAGGTCAAC-GATCCGCGTTTTAAAAGCAGAATCTAACTTATACGCAGCCATTGTTGG 1139
||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1168 AGTAGGTCAACTG-TCCGTGTTTTAAAAGCAGAATCTAACTTATATGCAGCCATTGTTGG 1226
Query 1140 TGAGAAACTGTGCATGAAGCTTGGAGACGGCTCTTGGTGCCCTTCTGGTAGAGACTGGAC 1199
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGAGAAAATATGTATGAAGCTTGGAGACGGCTCTTGGTGCCCTTCTGGTAGAGACTGGAC 1286
Query 1200 TCTAGCAACAAGTGGCCATCGCTATGCCGTCTGGCACAAGTAA 1242
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TCTAGCAACAAGTGGCCATCGCTATGCCGTCTGGCACAAGTAA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5