BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316541

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76190.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   545    8e-155


> AT1G76190.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr1:28592225-28592596 FORWARD LENGTH=372
Length=372

 Score =  545 bits (295),  Expect = 8e-155
 Identities = 349/374 (93%), Gaps = 7/374 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGAAACTATATTCTAAGGGGATTAGACTCTCCGAATTGATGGAGAAAT-G-G-AGA  57
            |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | | |||
Sbjct  1    ATGAAGAAACTAAATTCTAAAGGGATTAGACTCTCCGAATTGATGGAGAAATGGAGAAGA  60

Query  58   AGGAAGAGA-GGCTATTTCGCTTTGTACACGAAGGAAGGGAAGAGATTCGTTTTGCCATT  116
            ||||||| | ||| | |||||| |||||||||| |||||||||||||||||||| |||||
Sbjct  61   AGGAAGAAAGGGC-ACTTCGCTGTGTACACGAACGAAGGGAAGAGATTCGTTTTACCATT  119

Query  117  GGATTATTTGAATCA-CCGGATGTTACAAGTGTTATTGGAGATGGCTGAAGATGAGTTTG  175
            ||||||| ||||||| || ||||||||| ||| ||||| | |||||||| ||||||||||
Sbjct  120  GGATTATCTGAATCATCC-GATGTTACAGGTGCTATTGCAAATGGCTGAGGATGAGTTTG  178

Query  176  GGACTACCATCGATGGTCCTTTAAAGGTTCCTTGCGATGGAAGTTTATTGGATCACATCA  235
            |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  179  GGACTACCATTGATGGTCCTTTAAAAGTTCCTTGCGATGGAAGTTTAATGGATCACATCA  238

Query  236  TCATGCTTGTGAGAAGGAGCAAGTCCCATGATTATGATGATGTGGAGAAGTCTTCCACGA  295
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  239  TCATGCTTGTGAGAAGGAGCATGTCCCATGATTATGATGATGTGGAGAAGTCTTCCACGA  298

Query  296  GCAGCAGCTGCAAGGGAGCTTCAATCTCTTCTCTCTTTCGTGGACAGAGCCAGCTTCAGT  355
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  GCAGCACCTGCAAGGGAGCTTCAATCTCTTCTCTCTTTCGTGGACAGAGCCAGCTTCAGT  358

Query  356  CATTAGTTTCCTAA  369
            ||||||||||||||
Sbjct  359  CATTAGTTTCCTAA  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5