BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316562 Length=561 Score E Sequences producing significant alignments: (Bits) Value AT1G76410.1 | Symbols: ATL8 | RING/U-box superfamily protein | ... 885 0.0 > AT1G76410.1 | Symbols: ATL8 | RING/U-box superfamily protein | chr1:28668848-28669646 FORWARD LENGTH=799 Length=799 Score = 885 bits (479), Expect = 0.0 Identities = 527/551 (96%), Gaps = 0/551 (0%) Strand=Plus/Plus Query 1 ATGGGGCGCCTTCTCTTCCGTCTTCTCCAAGAAACCAATTCTACATCGCCGACGGAAGCT 60 |||| |||||||||||||||||||||||||||| ||||||||||||| ||| | |||||| Sbjct 68 ATGGCGCGCCTTCTCTTCCGTCTTCTCCAAGAAGCCAATTCTACATCTCCGGCTGAAGCT 127 Query 61 CCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTCGCGGTTCTTCTTTGTGCACTGACA 120 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 128 TCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTTGCGGTTCTTCTTTGTGCACTGACA 187 Query 121 TGTATCATCGGCTTAATCGCCGTCTCTCGATGCGCATGGCTCCGCCGTATCGCCTCAAGA 180 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 188 TGTATCATCGGCTTAATAGCCGTCTCTCGATGCGCTTGGCTCCGCCGTATCGCCTCAAGA 247 Query 181 AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCGGCTAACAAAGGTTTGAAAAAG 240 |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 248 AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCAGCCAACAAAGGATTGAAAAAG 307 Query 241 AAAGTCCTCCGATCGTTACCGAAACTCACTTACTCGCCGGATTCTCCACCGGCGGAGAAA 300 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 308 AAAGTCCTCCGGTCGTTACCGAAACTCACCTACTCGCCGGATTCTCCGCCGGCGGAGAAA 367 Query 301 CTCGTGGAGTGTGCCATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTCAGGGTGTTG 360 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 368 CTCGTGGAGTGTGCTATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTTAGGGTGTTG 427 Query 361 CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 428 CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT 487 Query 421 TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTGCCAGGTGTCATAAATGTGGCGGGTTA 480 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 488 TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTACCAGGTGTCATAAATGTGGCGGGTTA 547 Query 481 CCCGGTAGCTCAAGCTCAGGATCCGAACCCGATACCCGAATCAAGCAACGAGAAGATGAT 540 |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| | Sbjct 548 CCCGGTAGCTCAAGTTCAGGACCCGAACCCGATACCCGAATCAAACAACGTGAAGATGGT 607 Query 541 CCTGCTAACTT 551 |||| |||||| Sbjct 608 CCTGATAACTT 618 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26925502792 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5