BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316562

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76410.1 | Symbols: ATL8 | RING/U-box superfamily protein | ...   885    0.0  


> AT1G76410.1 | Symbols: ATL8 | RING/U-box superfamily protein 
| chr1:28668848-28669646 FORWARD LENGTH=799
Length=799

 Score =  885 bits (479),  Expect = 0.0
 Identities = 527/551 (96%), Gaps = 0/551 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGCGCCTTCTCTTCCGTCTTCTCCAAGAAACCAATTCTACATCGCCGACGGAAGCT  60
            |||| |||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||
Sbjct  68   ATGGCGCGCCTTCTCTTCCGTCTTCTCCAAGAAGCCAATTCTACATCTCCGGCTGAAGCT  127

Query  61   CCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTCGCGGTTCTTCTTTGTGCACTGACA  120
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  128  TCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTTGCGGTTCTTCTTTGTGCACTGACA  187

Query  121  TGTATCATCGGCTTAATCGCCGTCTCTCGATGCGCATGGCTCCGCCGTATCGCCTCAAGA  180
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  188  TGTATCATCGGCTTAATAGCCGTCTCTCGATGCGCTTGGCTCCGCCGTATCGCCTCAAGA  247

Query  181  AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCGGCTAACAAAGGTTTGAAAAAG  240
            |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct  248  AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCAGCCAACAAAGGATTGAAAAAG  307

Query  241  AAAGTCCTCCGATCGTTACCGAAACTCACTTACTCGCCGGATTCTCCACCGGCGGAGAAA  300
            ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  308  AAAGTCCTCCGGTCGTTACCGAAACTCACCTACTCGCCGGATTCTCCGCCGGCGGAGAAA  367

Query  301  CTCGTGGAGTGTGCCATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTCAGGGTGTTG  360
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  368  CTCGTGGAGTGTGCTATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTTAGGGTGTTG  427

Query  361  CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT  487

Query  421  TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTGCCAGGTGTCATAAATGTGGCGGGTTA  480
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  488  TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTACCAGGTGTCATAAATGTGGCGGGTTA  547

Query  481  CCCGGTAGCTCAAGCTCAGGATCCGAACCCGATACCCGAATCAAGCAACGAGAAGATGAT  540
            |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| |
Sbjct  548  CCCGGTAGCTCAAGTTCAGGACCCGAACCCGATACCCGAATCAAACAACGTGAAGATGGT  607

Query  541  CCTGCTAACTT  551
            |||| ||||||
Sbjct  608  CCTGATAACTT  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5