BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316570
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76490.1 | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglu... 2961 0.0
AT2G17370.1 | Symbols: HMG2, HMGR2 | 3-hydroxy-3-methylglutaryl... 494 2e-138
> AT1G76490.1 | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl
CoA reductase 1 | chr1:28695760-28698793 FORWARD LENGTH=2557
Length=2557
Score = 2961 bits (1603), Expect = 0.0
Identities = 1820/1923 (95%), Gaps = 21/1923 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAAAAGCAAGCTGGTCCCCAACAGACATGCGGGTTCGTCTCCTATAAAAC-TTG 59
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 42 ATGAAGAAAAAGCAAGCTGGTCCCCAACAGACATGCGAGTTCGTCTCCTATAAAACTTTG 101
Query 60 TTTAATCTCTCCTTCACACTTATCACGCCAcct---cacctc-ctcctctctcctctctc 115
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 102 -TTAATCTCTCCTTCACACTTATCACGCCACCTCACCACCTCTCTCCTCTCTCCTCTCTC 160
Query 116 t-ccctctGGAGAG---ATT-ATTCCCTCCAATGGATCTCCGACGGAGGCCTCCTAAGCC 170
| ||| |||||||| ||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 161 TCCCCCCTGGAGAGATTATTCATTCCCTCCAATGGATCTCCGTCGGAGGCCTCCTAAACC 220
Query 171 ACCGGTT---AACAAC-AC--CTCCGACGGATCTTTCCGTTCTTATCAAACC-CGCACTT 223
||||||| |||||| || |||| ||||||||||||||||||||| | || |||||||
Sbjct 221 ACCGGTTACCAACAACAACAACTCCAACGGATCTTTCCGTTCTTATC-AGCCTCGCACTT 279
Query 224 CCGATGACGATCACCGTCGCCGGACTACAACGATTGCTCCTCCACCTAAAGCATCCGATG 283
||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 280 CCGATGACGATCATCGTCGCCGGGCTACAACAATTGCTCCTCCACCGAAAGCATCCGACG 339
Query 284 CGCTTCCTCTTCCATTATATCTGACGAACGCCGTCTTCTTCACGCTCTTCTTCTCCGTCG 343
||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 340 CGCTTCCTCTTCCGTTATATCTCACAAACGCCGTTTTCTTCACGCTCTTCTTCTCCGTCG 399
Query 344 CGTATTATCTCCTCCACCGGTGGCGTGACAAGATCCGTTACAATACGCCTCTTCACGTCG 403
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CGTATTACCTCCTCCACCGGTGGCGTGACAAGATCCGTTACAATACGCCTCTTCACGTCG 459
Query 404 TCACTATCACAGAACTCGGCGCCATTATTGCTCTAATCGCTTCGTTTATCTATCTCCTAG 463
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 460 TCACTATCACAGAACTCGGCGCCATTATTGCTCTCATCGCTTCGTTTATCTATCTCCTAG 519
Query 464 GtttttttGGTATTGACTTTGTTCAGTCATTTATCTCACGCGCCTCCGGTGATGCTTGGG 523
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 520 GGTTTTTTGGTATTGACTTTGTTCAGTCATTTATCTCACGTGCCTCTGGTGATGCTTGGG 579
Query 524 ATCTCGCGGATACGATCGATGAAGACGACCACCGCCTCGTCACGTGCTCTCCACCGACTC 583
||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 580 ATCTCGCCGATACGATCGATGATGATGACCACCGCCTTGTCACGTGCTCTCCACCGACTC 639
Query 584 CGATCGTTTCCGTTGCTAAGTTACCAAATCCGGAGCCTATTGTTACCGAATCGCTTCCTG 643
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 640 CGATCGTTTCCGTTGCTAAATTACCTAATCCGGAACCTATTGTTACCGAATCGCTTCCTG 699
Query 644 AGGAAGACGAGGAGATTGTGAAATCCGTTATCGGCGGAGTGATCCCATCGTACTCGCTCG 703
||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||| |
Sbjct 700 AGGAAGACGAGGAGATTGTGAAATCGGTTATCGACGGAGTTATTCCATCGTACTCGCTTG 759
Query 704 AATCTCGTCTCGGTGATTGCAAAAGAGCGGCGTCGATTCGGCGGGAGGCGTTGCAGAGAG 763
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 760 AATCTCGTCTCGGTGATTGCAAAAGAGCGGCGTCGATTCGTCGTGAGGCGTTGCAGAGAG 819
Query 764 TCACCGGGAGATCGATGGAAGGATTACCGTTGGATGGATTTGATTATGAATCGATTTTGG 823
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 820 TCACCGGGAGATCGATTGAAGGGTTACCGTTGGATGGATTTGATTATGAATCGATTTTGG 879
Query 824 GGCAATGCTGTGAGATGCCTGTCGGATATATTCAGATTCCTGTGGGGATTGCTGGACCAT 883
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||
Sbjct 880 GGCAATGCTGTGAGATGCCTGTTGGATACATTCAGATTCCTGTTGGGATTGCTGGTCCAT 939
Query 884 TGTTGCTTGATGGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTTGTTTGGTTG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TGTTGCTTGATGGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTTGTTTGGTTG 999
Query 944 CTAGCACTAACAGAGGCTGCAAAGCCATGTATATCTCCGGTGGAGCCACCAGTACGGTTC 1003
|||||||||||||||||||||| || |||| |||||| ||||| ||||||||||| ||||
Sbjct 1000 CTAGCACTAACAGAGGCTGCAAGGCTATGTTTATCTCTGGTGGCGCCACCAGTACCGTTC 1059
Query 1004 TTAAGGACGGTATGACCCGAGCACCTGTCGTTCGGTTCGCTTCGGCGAGACGAGCTTCCG 1063
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1060 TTAAGGACGGTATGACCCGAGCACCTGTTGTTCGGTTCGCTTCGGCGAGACGAGCTTCGG 1119
Query 1064 AGCTTAAGTTTTTCTTGGAGAATCCAGAGAACTTTGATACTTTGACAGTAGTCTTCAACA 1123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1120 AGCTTAAGTTTTTCTTGGAGAATCCAGAGAACTTTGATACTTTGGCAGTAGTCTTCAACA 1179
Query 1124 GGTCGAGTAGATTCGCAAGATTGCAAAGTGTGAAATGCACAATCGCGGGGAAGAATGCTT 1183
||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1180 GGTCGAGTAGATTTGCAAGACTGCAAAGTGTTAAATGCACAATCGCGGGGAAGAATGCTT 1239
Query 1184 ATGTAAGGTTCTGTTGTAGTACTGGTGATGCTATGGGGATGAATATGGTATCTAAAGGTG 1243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1240 ATGTAAGGTTCTGTTGTAGTACTGGTGATGCTATGGGGATGAATATGGTTTCTAAAGGTG 1299
Query 1244 TGCAGAATGTTCTCGAATATCTTACCGATGATTTTCCC-GACATGGATGTGATTGGAATC 1302
||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1300 TGCAGAATGTTCTTGAGTATCTTACCGATGA-TTTCCCTGACATGGATGTGATTGGAATC 1358
Query 1303 TCTGGTAATTTTTGTTCGGACAAGAAACCTGCTGCTGTGAACTGGATTGAGGGACGTGGC 1362
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TCTGGTAACTTCTGTTCGGACAAGAAACCTGCTGCTGTGAACTGGATTGAGGGACGTGGT 1418
Query 1363 AAATCAGTTGTTTGTGAGGCTGTAATCAAAGGAGAGATCGTGAACAAGGTCTTAAAAACG 1422
|||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1419 AAATCAGTTGTTTGCGAGGCTGTAATCAGAGGAGAGATCGTGAACAAGGTCTTGAAAACG 1478
Query 1423 AGCGTGGCTGCTTTGGTCGAGCTCAATATGCTCAAGAATCTTGCGGGCTCTGCTGTTGCA 1482
|||||||||||||| ||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1479 AGCGTGGCTGCTTTAGTCGAGCTCAACATGCTCAAGAACCTAGCTGGCTCTGCTGTTGCA 1538
Query 1483 GGCTCTCTAGGTGGGTTCAACGCTCATGCCAGTAACATAGTCTCTGCTGTGTTCATAGCT 1542
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1539 GGCTCTCTAGGTGGATTCAACGCTCATGCCAGTAACATAGTGTCTGCTGTATTCATAGCT 1598
Query 1543 ACTGGCCAAGATCCAGCTCAAAACGTGGAGAGCTCTCAATGCATCACCATGATGGAAGCT 1602
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1599 ACTGGCCAAGATCCAGCTCAAAACGTGGAGAGTTCTCAATGCATCACCATGATGGAAGCT 1658
Query 1603 ATTAACGACGGCAAAGATATCCATATCTCAGTCACTATGCCATCTATCGAGGTGGGGACA 1662
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 ATTAATGACGGCAAAGATATCCATATCTCAGTCACTATGCCATCTATCGAGGTGGGGACA 1718
Query 1663 GTGGGAGGAGGAACACAGCTTGCATCTCAATCAGCGTGTTTAAACCTGCTGGGAGTGAAA 1722
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1719 GTGGGAGGAGGAACACAGCTTGCATCTCAATCAGCGTGTTTAAACCTGCTCGGAGTTAAA 1778
Query 1723 GGAGCGAGCAAAGAGTCGCCGGGAATGAACTCAAGGAGGCTAGCGACGATAGTGGCCGGA 1782
||||| |||| ||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1779 GGAGCAAGCACAGAGTCGCCGGGAATGAACGCAAGGAGGCTAGCGACGATCGTAGCCGGA 1838
Query 1783 GCAGTTTTAGCGGGAGAGTTATCTCTAATGTCAGCAATTGCAGCTGGACAGCTTGTGAGA 1842
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1839 GCAGTTTTAGCTGGAGAGTTATCTTTAATGTCAGCAATTGCAGCTGGACAGCTTGTGAGA 1898
Query 1843 AGTCACATGAAATACAACAGATCCAGCCGAGACATCTCTGGAGCAACGACAACAACAACA 1902
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1899 AGTCACATGAAATACAATAGATCCAGCCGAGACATCTCTGGAGCAACGACAACGACAACA 1958
Query 1903 ACA 1905
|||
Sbjct 1959 ACA 1961
> AT2G17370.1 | Symbols: HMG2, HMGR2 | 3-hydroxy-3-methylglutaryl-CoA
reductase 2 | chr2:7549775-7552201 FORWARD LENGTH=2141
Length=2141
Score = 494 bits (267), Expect = 2e-138
Identities = 946/1267 (75%), Gaps = 74/1267 (6%)
Strand=Plus/Plus
Query 645 GGAAGACGAGGAGATTGTGAAATCCGTTATCGGCGGAGTGATCCCATCGTACTCGCTCGA 704
|||||| || || || || |||| || |||| |||| ||||| |||||||| | ||
Sbjct 667 GGAAGATGAAGAAATCGTTAAATTAGTGATCGACGGAACCATCCCTTCGTACTCATTGGA 726
Query 705 -ATCTCGTCTCGGTGATTGCAAAAGAGCGGC-GTCGATTCGGCGGGAGGC-GTTGCAGA- 760
| | ||||| ||||| |||||||| || | ||||| | | || || ||| ||||
Sbjct 727 GA-CGAAACTCGGAGATTGTAAAAGAGCAGCAG-CGATTAGAAGAGAAGCGGTT-CAGAG 783
Query 761 GAGTCACCGGGAGATCGATGGAA--GGAT-TACCGTTGGATGGATTT-GATTATGAA-TC 815
|| | ||||| | ||| | || || | | || ||||| || ||| ||||| || ||
Sbjct 784 GA-TAACCGGTAAATC-CT-TAACCGG-TCTTCCATTGGAAGG-TTTCGATTA-CAATTC 837
Query 816 GATTTTGGGGCAATGCTGTGAGATGCCTGTCGGATATATTCAGATTCCTGTGGGGATTGC 875
|||||||||||||||||||||||||| || || ||| ||||||| || |||||||||||
Sbjct 838 AATTTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGGGATTGC 897
Query 876 TGGACCATTGTTGCTTGAT-GGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTT 934
||||| |||||||||||| || | |||||| || || || ||||||||||| |||||||
Sbjct 898 AGGACCTTTGTTGCTTGATGGGGT-TGAGTATTCAGTGCCAATGGCTACAACAGAAGGTT 956
Query 935 GTTTGGTTGCTAGCACTAACAGAGGCTGCAAAGCCATGTA-TATCTCCGGTGGAGCCACC 993
||||||||||||| || || ||||| | ||||| || | | | || ||||| ||
Sbjct 957 GTTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATACACT-TGTCTGGTGGTGCTTTT 1015
Query 994 AGTACGGTTC-T-T-AAGGACGGTATGACCCGAGCACCTGTCGTTCGGTTCGCTTCGGCG 1050
||| |||| | | || || | ||||| |||| || || ||| | ||| |||| ||
Sbjct 1016 AGT---GTTCTTGTGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGCA 1072
Query 1051 AGACGAGCTTC-CGAGCTTAAGTTTT-TCTTGGAGAATCCAGAGAACTTT-GATACTTTG 1107
||| ||||| | | | | | ||||| |||| || |||| || ||| || | |||
Sbjct 1073 AGAAGAGCTGCTCTTG-TCATGTTTTATCTTCAAG-ATCCTTCTAA-TTTCGAGAGATTG 1129
Query 1108 ACAGT-AGTCTTCAACAGGTCGAGTAGATTCGC-AAGATTGCAAAGTGTGAAATGCACAA 1165
| | | | ||||||| ||||||||||| || | | || || ||| | | |||||| |
Sbjct 1130 TCTCTCA-TTTTCAACAAATCGAGTAGATTTGCTAGGCTT-CAGAGTATTACATGCACGA 1187
Query 1166 TCGCGGGGAAGAATGCT-TATGTAAGGTTCTG-TTGTAGTACTGGTGATGCTATGGGGAT 1223
| || |||| |||| || ||| ||||| || ||||||||||||||||||||||||||
Sbjct 1188 TTGCTGGGAGGAAT-CTGTATCCGAGGTT-TGCGTGTAGTACTGGTGATGCTATGGGGAT 1245
Query 1224 GAATATGGTATCTAAAGGTGTGCAGAATGTTCTCGAA-TATCTTACCGAT-GATTTTCCC 1281
||| ||||| || |||||||| |||||||| || | | | | | | || || |||||
Sbjct 1246 GAACATGGTCTCAAAAGGTGTTCAGAATGT-CTTGGACTTTGTAAA-GAGCGAGTTTCCT 1303
Query 1282 GACATGGATGTGATTGGAATCTCTGGTAATTTTTGTTCGGACAAGAAACCTGCTGCTGTG 1341
||||||||||| ||||| |||||||| || | |||||||||||||| || | |||||
Sbjct 1304 GACATGGATGTTATTGGCATCTCTGGGAACTACTGTTCGGACAAGAAGGCTTCGGCTGTA 1363
Query 1342 AACTGGATTGAGGGACGTGGCAAATCA-GTTGTTTGTGAGGCTGTAATCAAAGGA-GAGA 1399
|||||||| || |||||||| || || ||||| ||||| ||| | || || || ||||
Sbjct 1364 AACTGGATCGAAGGACGTGGTAAG-CATGTTGTATGTGAAGCTTTTATTAA-GGCTGAGA 1421
Query 1400 TCGTGAACAAGGTCTTAAAAACGAGCGTGGCTGCT-TTGGTCGAGCTCAATATGCTCAAG 1458
| ||| | || || || || || ||||| | ||| ||| | ||||| || | |||||||
Sbjct 1422 TTGTGGAGAAAGTGTTGAAGACTAGCGTTGAGGCTCTTG-TAGAGCTTAACACGCTCAAG 1480
Query 1459 AATCTTGCGGGCTCTGCTGTTGCAGGCTCTCTAGGTGGGTTCAACGCTCATGCCAGTAAC 1518
||||||| || || || | || || ||||| ||||||||||| |||||| | || ||
Sbjct 1481 AATCTTGTTGGTTCAGCCATGGCGGGTTCTCTTGGTGGGTTCAATGCTCATTCAAGCAAT 1540
Query 1519 ATAGTCT-CTGCTGTGTTCATAGCTACTGGCCAAGATCCAGCTCAAAACGTGGAGAGCTC 1577
|| ||| | ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1541 ATTGTCAGC-GCTGTGTTCATCGCCACTGGCCAAGACCCAGCTCAAAACGTGGAGAGCTC 1599
Query 1578 TCAATGCATCACCATGATGGAAGCTATTAACGACGGCAAAGATATCCATATCTCAGTCAC 1637
|| || || |||||||| || | ||| || | || | || ||||| || |
Sbjct 1600 ACACTGTATGACCATGATT----CT-TCC-CGATGGTGACGACCTTCACATCTCTGTTTC 1653
Query 1638 TATGCCAT-CTATCGAGGTGGGGACAGTGGGAGGAGGAACACAGCTTGCATCTCAATCAG 1696
||||| | | || ||||| || || || ||||| || ||||| |||||||| ||| |||
Sbjct 1654 AATGCCTTGC-ATTGAGGTTGGTACTGTTGGAGGTGGGACACAACTTGCATCACAAGCAG 1712
Query 1697 CGTGTTTAAACCTGCTGGGAGTGAAAGGAGCGAGCAAAGAGTCGCCGGGAAT-GAACTCA 1755
| ||||| || || || || ||||||||| | | ||| ||| || || | |||| ||
Sbjct 1713 CTTGTTTGAATCTACTCGGTGTGAAAGGATCAAACAACGAGAAACCTGGC-TCGAACGCA 1771
Query 1756 -AGGAGGCTAGCGACGA-TAGTGGCCGGAGCAGTT-TTAGCGGGAGAG-TTATCTCTAAT 1811
|| | | || | || ||||||| || | ||| || || |||||| || || |||||
Sbjct 1772 CAGCAAT-TGGCAA-GAATAGTGGCTGGTTCGGTTCTT-GCAGGAGAGCTT-TCACTAAT 1827
Query 1812 GTCAGCAATTGCAGCTGGACAGCTTGTGA-GAAGTCACATGAAATACAACAGATCCAGCC 1870
||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1828 GTCTGCTATTGCAGCTGGACAGCTTGTGAAGA-GTCACATGAAATACAACAGATCCAGCA 1886
Query 1871 GAGACAT 1877
|||||||
Sbjct 1887 GAGACAT 1893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94477425690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5