BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316589
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76710.1 | Symbols: SDG26 | SET domain group 26 | chr1:28789... 1814 0.0
> AT1G76710.1 | Symbols: SDG26 | SET domain group 26 | chr1:28789729-28792676
REVERSE LENGTH=1751
Length=1751
Score = 1814 bits (982), Expect = 0.0
Identities = 1155/1232 (94%), Gaps = 38/1232 (3%)
Strand=Plus/Plus
Query 1 ATGCAGTTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAGTATGAACACATT 60
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 115 ATGCAATTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAATATGAACACATT 174
Query 61 TATCAAAATGACTTCTCATATCGAAAGCACAAGAAACAGAAGGAAGAAGATATTTCTATC 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 175 TATCAAAATGACTTCTCTTATCGAAAGCACAAGAAACAAAAGGAAGAAGATATATCTATC 234
Query 121 TGCGAATGCAAGTTTGATTTTGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGCGAATGCAAGTTTGATTTCGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT 294
Query 181 GTCATTACCAACACCGAATGTACTCCTGGATACTGCCCCTGTGGTGTCTATTGCAAGAAT 240
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 GTCATTACCAACACTGAATGTACTCCTGGTTACTGCCCCTGTGGTGTCTATTGCAAGAAT 354
Query 241 CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGCGGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 355 CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGTGGT 414
Query 301 TGGGGACTAGTGGCTCTTGAAGACATAAAGGCGGGACAGTTTATAATTGAGTACTGTGGC 360
||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 415 TGGGGACTAGTGGCTCTTGAAGAGATAAAGGCGGGGCAATTTATAATGGAGTACTGTGGT 474
Query 361 GAAGTAATATCATGGAAAGAAGCAAAG-CGTAGGGCTCAAACTTATGAAACTCATGGTGT 419
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 475 GAAGTAATATCATGGAAAGAAGCAAAGAAG-AGGGCTCAAACTTATGAAACTCATGGTGT 533
Query 420 CAAGGATGCATACATTATATCTCTCAATGCGTCTGAGGCTATTGATGCCACTAAGAAGGG 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 CAAGGATGCATACATTATATCTCTCAATGCATCTGAGGCTATTGATGCCACTAAGAAGGG 593
Query 480 AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA 653
Query 540 TGTACTGGGAGAAGTTAGGGTTGGAATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 TGTACTGGGAGAAGTTAGGGTTGGGATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA 713
Query 600 ATTGGCCTACGACTATAATTTTGAATGGTATGGTGGTGCCAAAGTCCGTTGTCTCTGTGG 659
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 714 ATTGGCTTACGACTATAATTTTGAATGGTACGGTGGTGCCAAAGTGCGTTGTCTCTGTGG 773
Query 660 TGCAGTCGCATGTTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGGCAAGTCCTTA 719
||| || ||||| ||||||||||||||||||||||||||||||||||||| | | |
Sbjct 774 TGCGGTTGCATGCTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGG-AGG-----A 827
Query 720 CATTATCATCCTAATAGAGGATACATATGTATGGGAGGATGGTGATGATCGGTATTCAGT 779
| | ||| | | | || | | || |||||||||| ||||||||||||||
Sbjct 828 --T-A-CAT---A-T-G----TA--T--G---GG-AGGATGGTGACGATCGGTATTCAGT 866
Query 780 TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCCTCTAAGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 867 TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCTTCTAAGAA 926
Query 840 TGACGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA 899
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TGGCGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA 986
Query 900 GTCTACTGCTCTGACTGTTCA---GCAATCAGATTCAAC---A-C-C-TATGGAGGAAGA 950
|||||||||||||| | |||| ||||||||||||||| | | | ||||||||||||
Sbjct 987 GTCTACTGCTCTGAATATTCAACAGCAATCAGATTCAACTCCAACTCCTATGGAGGAAGA 1046
Query 951 TGTTGTCACGGAGACTGTTAAAACCGAAACAGCTGAAGACATGAAGCTGCTCTCACAAAA 1010
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1047 TGTCGTCACGGAGACTGTTAAAACCGAAACATCTGAAGACATGAAGCTGCTCTCACAAAA 1106
Query 1011 TTCACAAGAAGATTCATCGCCGAAGACTGCAATTGTATCACGGGTTCGCGGTAACATTTA 1070
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1107 TTCACAAGAAGATTCATCGCCAAAGACTGCAATTGTATCACGGGTTCACGGTAACATTTC 1166
Query 1071 CAAAATTAAGTCTGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGGAAAAC 1130
||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1167 CAAGATCAAGTCCGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGAAAAAC 1226
Query 1131 AAAGAATGTCGCCCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA 1190
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 AAAGAATGTCGCTCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA 1286
Query 1191 AGAAGCTCAAGATGAAGTTCTCAAATACGAGG 1222
||||||||||||||||||||||||||||||||
Sbjct 1287 AGAAGCTCAAGATGAAGTTCTCAAATACGAGG 1318
Score = 481 bits (260), Expect = 1e-134
Identities = 272/278 (98%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 1301 AGGAGGTGAAGAAGGAGGCAGCAGTACGACTCTCGTCATTGTACGATGAGATAAGGCCAG 1360
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1316 AGGAGGTGAAGAAGGAAGCAGCAGTACGACTCTCGTCATTGTACGACGAGATAAGGCCGG 1375
Query 1361 CGATTGAGGAGCATGAGAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT 1420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CGATTGAGGAGCATGAAAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT 1435
Query 1421 GGATACAAGCAAGCTGTAATAAACTAAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA 1480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 GGATACAAGCAAGCTGTAATAAACTCAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA 1495
Query 1481 AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAGGCAG 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAAGCAG 1555
Query 1541 GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA 1578
||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5