BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316610

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76952.1 | Symbols: IDL5 | inflorescence deficient in abscis...   510    3e-144


> AT1G76952.1 | Symbols: IDL5 | inflorescence deficient in abscission 
(IDA)-like 5 | chr1:28914284-28914952 REVERSE LENGTH=439
Length=439

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 317/336 (94%), Gaps = 6/336 (2%)
 Strand=Plus/Plus

Query  1    ATGGGCAACAAACGTATAGAAGCAATGATGATTCTAGTGGTAAT--T-ATGATGGTGTTC  57
            |||||||| ||||| ||| |||||||||||||||||||||||||  | ||||||||||||
Sbjct  1    ATGGGCAATAAACGCATAAAAGCAATGATGATTCTAGTGGTAATGATCATGATGGTGTTC  60

Query  58   TCATGGAGGATTTGTGAAGCCGAGAGCTTAAGAAGACACACATCATCATCAAGACCACAA  117
            ||||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||
Sbjct  61   TCATGGAGGATTTGTGAAGCCGATAGCTTAAGAAGATACTCATCATCGTCAAGACCACAA  120

Query  118  AGATTTTTCAAGGTGAGAAGGCCTAATCCCC---ATCATCATCATCAGAATCAAGGTTTC  174
            |||||||||||||||||||| ||||| ||||   ||||||||||||||||||||||||||
Sbjct  121  AGATTTTTCAAGGTGAGAAGACCTAACCCCCGTAATCATCATCATCAGAATCAAGGTTTC  180

Query  175  ATTGATGATGATTATCCTCCAGAAAGTTTCTCAGGATTTTTGCCCAAGACATTGCCAATT  234
            | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATGGTGATGATTATCCTCCAGAAAGTTTCTCAGGATTTTTGCCCAAGACATTGCCAATT  240

Query  235  CCACCTTCTGCGCCTTCCAGGAAACACAACGTCTACGGTTTACAGAGAACCAACTCAAGG  294
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCACATTCTGCTCCTTCCAGGAAACACAACGTCTACGGTTTACAGAGAACCAACTCAAGG  300

Query  295  TCGAGCTATTTTTGGACGCACGCCCACTTATCTTAA  330
            ||||||||||||||||||||||||||||||||||||
Sbjct  301  TCGAGCTATTTTTGGACGCACGCCCACTTATCTTAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5