BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316611
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76955.1 | Symbols: | Expressed protein | chr1:28918810-289... 390 2e-108
> AT1G76955.1 | Symbols: | Expressed protein | chr1:28918810-28919545
REVERSE LENGTH=608
Length=608
Score = 390 bits (211), Expect = 2e-108
Identities = 229/237 (97%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAAACGCC-A--AGTTCATCGAAGCTCCTTATGATGATGCTTTTCTCATTCTTG 57
|||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 10 ATGGCTAAAACGCCAAGTAGTTCATCGAAGCTCCTTGTGATGATGCTTTTCTCATTCTTG 69
Query 58 GCTCTTTTCATAATCTCCCATGCTCGAGTTGTTTTTACTGATACGCCGTCTAATTCGTAC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GCTCTTTTCATAATCTCCCATGCTCGAGTTGTTTTTACTGATACGCCGTCTAATTCGTAC 129
Query 118 GCTCCACCTATTTACGCTCCTGTTCCTAAGAAATGTCTCGAGCCACCTTATTGCCGCGGT 177
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 130 GCTCCACCTATTTACGCTCCTGTTCCTAAGGAATGTCTCAAGCCACCTTATTGCCGCGGT 189
Query 178 CCTCCCGGAGAGTCTCAATTTGGTTACAATGAAAGAAACTATTATCAAACTAATTAA 234
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 190 CCTCCCGGAGAGTCTCAATTTGTTTACAATGAAAGAAACTATTATCAAATTAATTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5