BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316612
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76965.1 | Symbols: | Encodes a Protease inhibitor/seed sto... 634 0.0
> AT1G76965.1 | Symbols: | Encodes a Protease inhibitor/seed storage/LTP
family protein | chr1:28921729-28922292 REVERSE LENGTH=564
Length=564
Score = 634 bits (343), Expect = 0.0
Identities = 500/572 (87%), Gaps = 25/572 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATCATTCCATTGATGCTCATTTCCGTCATCATACTCTTGACATCATTTCCGGCT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGATCATTCCATTGATGCTCATTTCCGTTATCATACTCTTGACATCATTTCCGGCT 60
Query 61 CCGATTAAAGTCTCCGGCAGGGGCGGCGGCGGCGGCTTTGTTGGTAGTGGGAATC-CTGG 119
||||||||||| ||||||||||| || || |||||||||||||||||||| || | ||
Sbjct 61 CCGATTAAAGTGTCCGGCAGGGGTGGAGGAGGCGGCTTTGTTGGTAGTGGCAA-CTCTCC 119
Query 120 TGGTATTGGAAGCGGCTATTTTGGTGGTGGTGGGAATGCTGGCCCCGGCTATAGGGGTGG 179
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 120 TAGTATTGGAAGCGGCTATTTTGGTGGTGGTGGGAATCCTGGCACCGGCTATATGGGTGG 179
Query 180 AAATATCCCTAGCGGCGGCAGCATTAGGGATGGGAGTAATGTTGGCACCGGTTATAGGGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGTATCCCTAGCGGCGGCAGCATTAGGGATGGGAGTAATGTTGGCACCGGTTATAGGGG 239
Query 240 TGGGGCTTCA-GGCGGCAAGCCTTCGGGTGGCGGTGACACCGGTCCGGCAATTGTGGTGA 298
|||| |||| || ||||||||||| ||||| |||||| ||||| ||||||||||||||
Sbjct 240 TGGGT-TTCAAGGAGGCAAGCCTTCAGGTGGTGGTGACCCCGGTGCGGCAATTGTGGTGT 298
Query 299 TTCCTAAGAAGCCCGATGAACCTGTGAAGGTGGTGCCCACGCCAATGCCACAATATAGGA 358
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 299 TTCCTAAGAAGCCCGAGGAACCTGTGAAGGTGGTGCCAACGCCAATGCCACAAG-T---- 353
Query 359 TGCCAATGCCACAAGAATGCCTACCTGAAGTTAGACATTGCATCAATACACATGTATACG 418
| ||| ||| || | |||||||||||||||||||| |||||||||||
Sbjct 354 T-----TGC-----GAA--CCGA----AAGTTAGACATTGCATCAATGTACATGTATACG 397
Query 419 GAGGTGCTGGGGAACCTCACCAAGGCGGAGCATGTTGTAACAAATTTAGGCAATCAAGAA 478
|| | || ||| ||||||||| |||||||||||||||||||||||||||| | | ||||
Sbjct 398 GACGCGCCGGGCAACCTCACCGAGGCGGAGCATGTTGTAACAAATTTAGGTACGCGAGAA 457
Query 479 GATGTATCTGTAAATTCCTTGAGTCTCAGGATGCTCACCTAACCAAAAAATCTAGTGGTA 538
||||| ||||||||||||||| |||| | ||| ||||||||| |||| |||||| ||||
Sbjct 458 GATGTGTCTGTAAATTCCTTGTGTCTAATGATACTCACCTAAACAAACAATCTAATGGTG 517
Query 539 TACTTCGAGGTTGTCATTTTAAACGCAACTGT 570
|||||||||||||||||||||||||||| |||
Sbjct 518 TACTTCGAGGTTGTCATTTTAAACGCAATTGT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5