BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316620
Length=2505
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides... 3842 0.0
> AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,
in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic
acid binding;ATP binding;RNA binding;helicases |
chr1:28947743-28951599 REVERSE LENGTH=2755
Length=2755
Score = 3842 bits (2080), Expect = 0.0
Identities = 2398/2545 (94%), Gaps = 47/2545 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGAAGGAAACGGTTTCTTGGTGAGCTCGGTTACTGAGCTTCACCGGAAAGAGAAA 60
|||||||||||||| || ||| | |||||||| || |||||||||||||| |||||||||
Sbjct 74 ATGGTTGAAGGAAAGGGCTTCCTCGTGAGCTCAGTGACTGAGCTTCACCGTAAAGAGAAA 133
Query 61 CAGAAGAAGAAAGGCAAATCTGGAGGATTTGAGTCACTAAACCTAGGTCCTAATGTCTTC 120
||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 134 CAGAAGAAGAAAGGCAAATCTGGAGGATTCGAGTCACTAAATCTCGGACCTAATGTCTTC 193
Query 121 AATGCAATCAAGAAAAAGGGTTACAAAGTTCCTACACCAATCCAGAGGAAGACGATGCCG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 194 AATGCAATCAAGAAAAAGGGTTACAAAGTTCCTACACCAATTCAGAGGAAGACGATGCCG 253
Query 181 CTTATTCTCTCAGGCGTCGATGTTGTCGCTATGGCTCGAACCGGTTCCGGTAAAACCGCA 240
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 254 CTTATTCTCTCTGGCGTCGATGTTGTCGCTATGGCTCGAACCGGTTCTGGAAAAACCGCA 313
Query 241 GCTTTTCTCATCCCTATGCTTGAGAAGCTCAAACAACACGTTCCTCAGGGAGGTGTTAGA 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 314 GCTTTTCTCATCCCTATGCTTGAGAAGCTCAAACAACACGTTCCTCAAGGAGGTGTTAGA 373
Query 301 GCACTCATCTTGTCTCCTACTCGTGATTTAGCTGAGCAGACTCTGAAGTTCACCAAGGAA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 374 GCACTCATCTTGTCTCCTACTCGTGACTTAGCTGAGCAGACTCTGAAGTTCACCAAGGAA 433
Query 361 CTCGGCAAATTTACAGATCTTCGTGTATCCTTACTGGTTGGTGGAGATAGTATGGAAGAC 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTTGGCAAATTTACAGATCTTCGTGTATCCTTACTGGTTGGTGGAGATAGTATGGAAGAC 493
Query 421 CAGTTTGAAGAATTGACAAAGGGACCTGATGTGATTATTGCAACTCCTGGGAGACTTATG 480
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 494 CAGTTTGAAGAGTTAACAAAGGGACCTGATGTGATTATTGCTACTCCTGGGAGACTTATG 553
Query 481 CATCTTTTGTCTGAGGTTGATGATATGACACTTAGGACCGTTGAGTATGTGGTTTTCGAT 540
|||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| |||
Sbjct 554 CATCTTTTATCTGAGGTTGATGATATGACGCTAAGGACGGTTGAGTATGTAGTTTTTGAT 613
Query 541 GAGGCAGATAGTCTCTTTGGTATGGGTTTTGCTGAACAGTTGCATCAGATTCTTACTCAG 600
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 614 GAGGCAGATAGTCTGTTTGGTATGGGGTTTGCTGAACAGTTACATCAGATTCTAACTCAG 673
Query 601 TTAAGTGAGAATAGGCAGACTTTGCTTTTTAGCGCCACTTTACCAAGTGCCCTTGCAGAA 660
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 674 TTAAGTGAGAATAGGCAGACTTTGCTATTTAGTGCCACTTTACCAAGTGCCCTTGCTGAA 733
Query 661 TTTGCAAAGGCGGGTTTGCGTGAGCCTCAGCTTGTTCGTTTAGATGTTGAGAACAAGATA 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 734 TTTGCAAAGGCTGGTTTGCGTGAGCCTCAGCTTGTTCGTTTAGATGTTGAGAATAAGATA 793
Query 721 AG-CCCGGATTTG-AGACTTTCGTTTTTGACTGTACGACCGGAAGAGAAGTATGCTGCGT 778
|| ||| |||||| || |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 794 AGTCCC-GATTTGAAG-CTTTCGTTTTTGACTGTACGACCGGAAGAGAAGTATTCTGCAT 851
Query 779 TGCTGTACTTGGTAAGGGAGCATATAAGTTCAGATCAACAGACCTTGATCTTTGTTTCGA 838
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 852 TGCTGTACTTGGTTAGGGAGCATATAAGTTCAGATCAACAGACCTTGATATTTGTTTCGA 911
Query 839 CAAAGCATCATGTGGAATTTGTCAACTCATTGTTTAAGTTGGAAAATATTGAGCCATCTG 898
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 912 CAAAGCATCATGTGGAATTTGTCAACTCATTGTTTAAGTTGGAGAATATTGAGCCATCTG 971
Query 899 TTTGTTATGGTGATATGGATCAAGATGCGCGTAAGATTCATGTATCAAGGTTCAGAGCAA 958
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 972 TATGTTATGGTGATATGGATCAAGATGCACGTAAGATTCATGTATCAAGGTTCAGAGCGA 1031
Query 959 GGAAGACTATGTTGTTGATTGTGACAGATATTGCTGCTAGGGGTATTGACATACCATTGC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GGAAGACTATGTTGTTGATTGTGACAGATATTGCTGCTAGGGGTATTGACATACCATTGC 1091
Query 1019 TTGATAATGTTATAAACTGGGATTTCCCTCCGAGACCAAAGATTTTTGTTCATCGTGTGG 1078
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1092 TTGATAATGTTATAAACTGGGATTTCCCTCCGAGACCGAAGATTTTTGTTCATCGTGTGG 1151
Query 1079 GAAGAGCTGCCAGGGCTGGTCGTACAGGTTCTGCATATTCCTTTGTTACACCTGAGGATA 1138
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1152 GAAGAGCTGCCAGGGCTGGTCGTACAGGCTGTGCATATTCCTTTGTTACACCTGAGGATA 1211
Query 1139 TGCCATATATGTTGGATCTTCATCTGTTCCTCTCAAAACCGGTCAGGCCAGCACCCACTG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1212 TGCCATATATGTTGGATCTTCATCTGTTCCTCTCAAAACCGGTCAGGCCAGCGCCCACTG 1271
Query 1199 AGGATGAGGTCTTGAAGAACATGGACGAAGTAATGACCAAAACTAGTCAAGCAATTGATA 1258
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1272 AGGATGAGGTCTTGAAGAACATGGAAGAAGTAATGACCAAAACTAGTCAAGCAATTGATA 1331
Query 1259 GTGGAGTAACCGTCTATGGTCGTTTCCCACAGAAAACCATTGATCTTATCTTTAACAGAA 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1332 GTGGAGTCACCGTCTATGGTCGTTTCCCACAGAAAACCATTGATCTTATCTTTAATAGAA 1391
Query 1319 CCCGGGAAATGATTGATTCATCTGCAGAATTAGATTCCCTTGAAAGAACATCCACAAAAG 1378
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1392 CCAGAGAAATGATTGATTCATCTGCAGAATTAGATTCCCTTGAACGAACATCCACCAAAG 1451
Query 1379 CTTTTCGCTTGTATTCAAAAACAAAACCCTCACCGTCAAAAGAGTCCATTAGGAGAGCAA 1438
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1452 CTTTTCGCTTGTATTCAAAAACAAAACCCTCACCGTCAAAAGAATCCATTAGGAGAGCAA 1511
Query 1439 AGGATTTACCCCGGGAAGGCTTGCATCCCATCTTCAGAAGCATTATTGAAACTGGGGAAT 1498
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 AGGATTTACCACGAGAAGGCTTGCATCCCATCTTCAGAAGCATTATTGAAACTGGGGAAT 1571
Query 1499 TAGAGGCTATGTCGTTTTTCCAGAAAATTAAAAATTTCAAACCCAAGCAGACCATACTTG 1558
||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1572 TAGAGGCAATGTCGTTTTTCCAGAAAATTAAAAATTTCAGACCCAAGCAAACGATACTTG 1631
Query 1559 AAGCAGAAGGTGAAGTTGCCAAATCCAAACATGTGAAGGGTCCCGCTGGCCAATGGGTTG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AAGCAGAAGGTGAAGTTGCCAAATCCAAACATGTGAAGGGTCCCGCTGGCCAATGGGTTG 1691
Query 1619 ATGTGATGAAGAAGAAAAGAGCCATTCATGAGGAGATCATCAATACAAGACATCAGCAGA 1678
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1692 ATGTGATGAAGAAGAAAAGAGCTATTCATGAGGAGATCATCAATACAAGACATCAGCAGA 1751
Query 1679 ATCAGAAGAGCT-CCAATAATCATTTGGAGATGGAAGCTGAACCTACAACTTCTTTTGAT 1737
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1752 ATCAAAAGA-CTTCCAATAATCATTTGGAGATGGAAGCTGAACCTACAACTTCTTTTGTT 1810
Query 1738 GAGGGCACAATAGAGGGAAGCAAAGTAAGCGGTAAGAAAAGAAAGGCACAAGAAAGTTTC 1797
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1811 GATGGCACAGTAGAGGGAAGCAAAGTAAGCGGTAAGAAAAGAAAGGCACAAGAAACCTTC 1870
Query 1798 AAGGACGATGATTTCTATATCAGCTCCATACCAGTAAATCATCATTCAGAGGCAGGGCTG 1857
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 AAGGACGATGAATTCTTTATCAGCTCCATACCAGTAAATCATCATTCAGAGGCAGGGCTA 1930
Query 1858 TCTCTAAGGGGTAACGAAGGGTTTGGATCGAATAGGTTGGACGCTGCTGTTCTAGATCTA 1917
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1931 TCTCTGAGGGGTAACGAAGGATTTGGATCGAATAGGTTGGACGCTGCTGTTCTAGATCTA 1990
Query 1918 GTTGCAGATGATGGGCAAGGGATGAAGCAGCAACAATCAAATTATCACTGGGACAAGAAA 1977
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1991 GTTGCAGATGATGGGCAAGGGATAAAGCAGCAACAATCAAATTATCACTGGGACAAGAAA 2050
Query 1978 AGTAAGAAGTACATCAAGTTGAACAATGGAGATCGAGTAACAGCCAGTGGAAAGATAAAG 2037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 GGTAAGAAGTACATCAAGTTGAACAATGGAGATCGAGTAACAGCCAGTGGAAAGATAAAG 2110
Query 2038 ACAGAGAGTGGAGCTAAAGTGAAAGCAAACAAGACAGGGATATACAAGAGATGGCAAGAG 2097
||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 2111 ACAGAGAGTGGAGCTAAAGCGACTGCAAAGAAGACAGGGATATACAAGAGATGGCAAGAG 2170
Query 2098 AGGTCTCATAAGAAAGTATTCAGCCGAGACGGCGGTGATGCAGACGAAACCACACGAATG 2157
|||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 2171 AGGTCTCACAAGAAAGTAT-C--CCGAGACAGCGGTGATGCAGACGAAACCACACGAATG 2227
Query 2158 TCAGGTAGAGGAGGCCGAGATGGGAAGAGACGGCAAGGATCAGTGCCTAACGCGCATGTG 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2228 TCAGGTAGAGGAGGCCGAGATGGGAAGAGACGGCAAGGATCAGTGCCTAACGCACATGTT 2287
Query 2218 CGTTCAGAGATCAAAGATCTGGAGCAGGTGCGTAAGGAGAGACAGCAAAAGGCAAACAAA 2277
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2288 CGTTCAGAGATCAAAGATCTGGACCAGGTGCGTAAGGAGAGACAGCAAAAGGCAAACAAA 2347
Query 2278 GTGTCTTATCTGCAGAGCAAGAGAGGCGGAAGAGGTGGAA---------CCAGGGGAGGC 2328
|| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2348 GTTTCTTATCTGCAGAGCAAGAGAGGCGGAAGAGGTGGAAGAGGTGGGGCCAGGGGAGGC 2407
Query 2329 CGTGGTGGCAGA---AGGGAATT---TGGTGGT-G--G--A----GGTGG---A--A-GG 2367
|||||||| | |||| | |||||| | | | ||||| | | ||
Sbjct 2408 CGTGGTGGTGGGGCCAGGGGAGGCCGTGGTGGCAGCAGGGATTTTGGTGGTGGAGGAAGG 2467
Query 2368 GATTTTGGTAGTAGCAGCGATAGAGGTGGGAGAAGTGGCGGGAGGGATTTCGGTGGTCGT 2427
|||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 2468 GATTTTGGCAGTAGCAGCGATAGAGGTGGAAGAAGTGGCGGTAGGGATTTTGGTGGTCGT 2527
Query 2428 CGTGGTGGTAG-TAGCACTAGTa--agaga-gg-a-g-gaggaagaggaagaggaagtgg 2480
||||||||| | ||||||||||| |||| || | | ||||| ||||||||||| ||||
Sbjct 2528 CGTGGTGGT-GCTAGCACTAGTAGCAGAGGTGGTAAGAGAGGAGGAGGAAGAGGAGGTGG 2586
Query 2481 aggtaaacgtgggagaggaagaTAG 2505
|||||||||||||||||||||||||
Sbjct 2587 AGGTAAACGTGGGAGAGGAAGATAG 2611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124313684754
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5