BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316620 Length=2505 Score E Sequences producing significant alignments: (Bits) Value AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides... 3842 0.0 > AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases | chr1:28947743-28951599 REVERSE LENGTH=2755 Length=2755 Score = 3842 bits (2080), Expect = 0.0 Identities = 2398/2545 (94%), Gaps = 47/2545 (2%) Strand=Plus/Plus Query 1 ATGGTTGAAGGAAACGGTTTCTTGGTGAGCTCGGTTACTGAGCTTCACCGGAAAGAGAAA 60 |||||||||||||| || ||| | |||||||| || |||||||||||||| ||||||||| Sbjct 74 ATGGTTGAAGGAAAGGGCTTCCTCGTGAGCTCAGTGACTGAGCTTCACCGTAAAGAGAAA 133 Query 61 CAGAAGAAGAAAGGCAAATCTGGAGGATTTGAGTCACTAAACCTAGGTCCTAATGTCTTC 120 ||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||| Sbjct 134 CAGAAGAAGAAAGGCAAATCTGGAGGATTCGAGTCACTAAATCTCGGACCTAATGTCTTC 193 Query 121 AATGCAATCAAGAAAAAGGGTTACAAAGTTCCTACACCAATCCAGAGGAAGACGATGCCG 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 194 AATGCAATCAAGAAAAAGGGTTACAAAGTTCCTACACCAATTCAGAGGAAGACGATGCCG 253 Query 181 CTTATTCTCTCAGGCGTCGATGTTGTCGCTATGGCTCGAACCGGTTCCGGTAAAACCGCA 240 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 254 CTTATTCTCTCTGGCGTCGATGTTGTCGCTATGGCTCGAACCGGTTCTGGAAAAACCGCA 313 Query 241 GCTTTTCTCATCCCTATGCTTGAGAAGCTCAAACAACACGTTCCTCAGGGAGGTGTTAGA 300 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 314 GCTTTTCTCATCCCTATGCTTGAGAAGCTCAAACAACACGTTCCTCAAGGAGGTGTTAGA 373 Query 301 GCACTCATCTTGTCTCCTACTCGTGATTTAGCTGAGCAGACTCTGAAGTTCACCAAGGAA 360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 374 GCACTCATCTTGTCTCCTACTCGTGACTTAGCTGAGCAGACTCTGAAGTTCACCAAGGAA 433 Query 361 CTCGGCAAATTTACAGATCTTCGTGTATCCTTACTGGTTGGTGGAGATAGTATGGAAGAC 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 CTTGGCAAATTTACAGATCTTCGTGTATCCTTACTGGTTGGTGGAGATAGTATGGAAGAC 493 Query 421 CAGTTTGAAGAATTGACAAAGGGACCTGATGTGATTATTGCAACTCCTGGGAGACTTATG 480 ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 494 CAGTTTGAAGAGTTAACAAAGGGACCTGATGTGATTATTGCTACTCCTGGGAGACTTATG 553 Query 481 CATCTTTTGTCTGAGGTTGATGATATGACACTTAGGACCGTTGAGTATGTGGTTTTCGAT 540 |||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| ||| Sbjct 554 CATCTTTTATCTGAGGTTGATGATATGACGCTAAGGACGGTTGAGTATGTAGTTTTTGAT 613 Query 541 GAGGCAGATAGTCTCTTTGGTATGGGTTTTGCTGAACAGTTGCATCAGATTCTTACTCAG 600 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 614 GAGGCAGATAGTCTGTTTGGTATGGGGTTTGCTGAACAGTTACATCAGATTCTAACTCAG 673 Query 601 TTAAGTGAGAATAGGCAGACTTTGCTTTTTAGCGCCACTTTACCAAGTGCCCTTGCAGAA 660 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct 674 TTAAGTGAGAATAGGCAGACTTTGCTATTTAGTGCCACTTTACCAAGTGCCCTTGCTGAA 733 Query 661 TTTGCAAAGGCGGGTTTGCGTGAGCCTCAGCTTGTTCGTTTAGATGTTGAGAACAAGATA 720 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 734 TTTGCAAAGGCTGGTTTGCGTGAGCCTCAGCTTGTTCGTTTAGATGTTGAGAATAAGATA 793 Query 721 AG-CCCGGATTTG-AGACTTTCGTTTTTGACTGTACGACCGGAAGAGAAGTATGCTGCGT 778 || ||| |||||| || |||||||||||||||||||||||||||||||||||| |||| | Sbjct 794 AGTCCC-GATTTGAAG-CTTTCGTTTTTGACTGTACGACCGGAAGAGAAGTATTCTGCAT 851 Query 779 TGCTGTACTTGGTAAGGGAGCATATAAGTTCAGATCAACAGACCTTGATCTTTGTTTCGA 838 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 852 TGCTGTACTTGGTTAGGGAGCATATAAGTTCAGATCAACAGACCTTGATATTTGTTTCGA 911 Query 839 CAAAGCATCATGTGGAATTTGTCAACTCATTGTTTAAGTTGGAAAATATTGAGCCATCTG 898 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 912 CAAAGCATCATGTGGAATTTGTCAACTCATTGTTTAAGTTGGAGAATATTGAGCCATCTG 971 Query 899 TTTGTTATGGTGATATGGATCAAGATGCGCGTAAGATTCATGTATCAAGGTTCAGAGCAA 958 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 972 TATGTTATGGTGATATGGATCAAGATGCACGTAAGATTCATGTATCAAGGTTCAGAGCGA 1031 Query 959 GGAAGACTATGTTGTTGATTGTGACAGATATTGCTGCTAGGGGTATTGACATACCATTGC 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 GGAAGACTATGTTGTTGATTGTGACAGATATTGCTGCTAGGGGTATTGACATACCATTGC 1091 Query 1019 TTGATAATGTTATAAACTGGGATTTCCCTCCGAGACCAAAGATTTTTGTTCATCGTGTGG 1078 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1092 TTGATAATGTTATAAACTGGGATTTCCCTCCGAGACCGAAGATTTTTGTTCATCGTGTGG 1151 Query 1079 GAAGAGCTGCCAGGGCTGGTCGTACAGGTTCTGCATATTCCTTTGTTACACCTGAGGATA 1138 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 1152 GAAGAGCTGCCAGGGCTGGTCGTACAGGCTGTGCATATTCCTTTGTTACACCTGAGGATA 1211 Query 1139 TGCCATATATGTTGGATCTTCATCTGTTCCTCTCAAAACCGGTCAGGCCAGCACCCACTG 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1212 TGCCATATATGTTGGATCTTCATCTGTTCCTCTCAAAACCGGTCAGGCCAGCGCCCACTG 1271 Query 1199 AGGATGAGGTCTTGAAGAACATGGACGAAGTAATGACCAAAACTAGTCAAGCAATTGATA 1258 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1272 AGGATGAGGTCTTGAAGAACATGGAAGAAGTAATGACCAAAACTAGTCAAGCAATTGATA 1331 Query 1259 GTGGAGTAACCGTCTATGGTCGTTTCCCACAGAAAACCATTGATCTTATCTTTAACAGAA 1318 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1332 GTGGAGTCACCGTCTATGGTCGTTTCCCACAGAAAACCATTGATCTTATCTTTAATAGAA 1391 Query 1319 CCCGGGAAATGATTGATTCATCTGCAGAATTAGATTCCCTTGAAAGAACATCCACAAAAG 1378 || | ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1392 CCAGAGAAATGATTGATTCATCTGCAGAATTAGATTCCCTTGAACGAACATCCACCAAAG 1451 Query 1379 CTTTTCGCTTGTATTCAAAAACAAAACCCTCACCGTCAAAAGAGTCCATTAGGAGAGCAA 1438 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1452 CTTTTCGCTTGTATTCAAAAACAAAACCCTCACCGTCAAAAGAATCCATTAGGAGAGCAA 1511 Query 1439 AGGATTTACCCCGGGAAGGCTTGCATCCCATCTTCAGAAGCATTATTGAAACTGGGGAAT 1498 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1512 AGGATTTACCACGAGAAGGCTTGCATCCCATCTTCAGAAGCATTATTGAAACTGGGGAAT 1571 Query 1499 TAGAGGCTATGTCGTTTTTCCAGAAAATTAAAAATTTCAAACCCAAGCAGACCATACTTG 1558 ||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||| Sbjct 1572 TAGAGGCAATGTCGTTTTTCCAGAAAATTAAAAATTTCAGACCCAAGCAAACGATACTTG 1631 Query 1559 AAGCAGAAGGTGAAGTTGCCAAATCCAAACATGTGAAGGGTCCCGCTGGCCAATGGGTTG 1618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 AAGCAGAAGGTGAAGTTGCCAAATCCAAACATGTGAAGGGTCCCGCTGGCCAATGGGTTG 1691 Query 1619 ATGTGATGAAGAAGAAAAGAGCCATTCATGAGGAGATCATCAATACAAGACATCAGCAGA 1678 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1692 ATGTGATGAAGAAGAAAAGAGCTATTCATGAGGAGATCATCAATACAAGACATCAGCAGA 1751 Query 1679 ATCAGAAGAGCT-CCAATAATCATTTGGAGATGGAAGCTGAACCTACAACTTCTTTTGAT 1737 |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1752 ATCAAAAGA-CTTCCAATAATCATTTGGAGATGGAAGCTGAACCTACAACTTCTTTTGTT 1810 Query 1738 GAGGGCACAATAGAGGGAAGCAAAGTAAGCGGTAAGAAAAGAAAGGCACAAGAAAGTTTC 1797 || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1811 GATGGCACAGTAGAGGGAAGCAAAGTAAGCGGTAAGAAAAGAAAGGCACAAGAAACCTTC 1870 Query 1798 AAGGACGATGATTTCTATATCAGCTCCATACCAGTAAATCATCATTCAGAGGCAGGGCTG 1857 ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1871 AAGGACGATGAATTCTTTATCAGCTCCATACCAGTAAATCATCATTCAGAGGCAGGGCTA 1930 Query 1858 TCTCTAAGGGGTAACGAAGGGTTTGGATCGAATAGGTTGGACGCTGCTGTTCTAGATCTA 1917 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1931 TCTCTGAGGGGTAACGAAGGATTTGGATCGAATAGGTTGGACGCTGCTGTTCTAGATCTA 1990 Query 1918 GTTGCAGATGATGGGCAAGGGATGAAGCAGCAACAATCAAATTATCACTGGGACAAGAAA 1977 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1991 GTTGCAGATGATGGGCAAGGGATAAAGCAGCAACAATCAAATTATCACTGGGACAAGAAA 2050 Query 1978 AGTAAGAAGTACATCAAGTTGAACAATGGAGATCGAGTAACAGCCAGTGGAAAGATAAAG 2037 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2051 GGTAAGAAGTACATCAAGTTGAACAATGGAGATCGAGTAACAGCCAGTGGAAAGATAAAG 2110 Query 2038 ACAGAGAGTGGAGCTAAAGTGAAAGCAAACAAGACAGGGATATACAAGAGATGGCAAGAG 2097 ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 2111 ACAGAGAGTGGAGCTAAAGCGACTGCAAAGAAGACAGGGATATACAAGAGATGGCAAGAG 2170 Query 2098 AGGTCTCATAAGAAAGTATTCAGCCGAGACGGCGGTGATGCAGACGAAACCACACGAATG 2157 |||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||| Sbjct 2171 AGGTCTCACAAGAAAGTAT-C--CCGAGACAGCGGTGATGCAGACGAAACCACACGAATG 2227 Query 2158 TCAGGTAGAGGAGGCCGAGATGGGAAGAGACGGCAAGGATCAGTGCCTAACGCGCATGTG 2217 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2228 TCAGGTAGAGGAGGCCGAGATGGGAAGAGACGGCAAGGATCAGTGCCTAACGCACATGTT 2287 Query 2218 CGTTCAGAGATCAAAGATCTGGAGCAGGTGCGTAAGGAGAGACAGCAAAAGGCAAACAAA 2277 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2288 CGTTCAGAGATCAAAGATCTGGACCAGGTGCGTAAGGAGAGACAGCAAAAGGCAAACAAA 2347 Query 2278 GTGTCTTATCTGCAGAGCAAGAGAGGCGGAAGAGGTGGAA---------CCAGGGGAGGC 2328 || ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2348 GTTTCTTATCTGCAGAGCAAGAGAGGCGGAAGAGGTGGAAGAGGTGGGGCCAGGGGAGGC 2407 Query 2329 CGTGGTGGCAGA---AGGGAATT---TGGTGGT-G--G--A----GGTGG---A--A-GG 2367 |||||||| | |||| | |||||| | | | ||||| | | || Sbjct 2408 CGTGGTGGTGGGGCCAGGGGAGGCCGTGGTGGCAGCAGGGATTTTGGTGGTGGAGGAAGG 2467 Query 2368 GATTTTGGTAGTAGCAGCGATAGAGGTGGGAGAAGTGGCGGGAGGGATTTCGGTGGTCGT 2427 |||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 2468 GATTTTGGCAGTAGCAGCGATAGAGGTGGAAGAAGTGGCGGTAGGGATTTTGGTGGTCGT 2527 Query 2428 CGTGGTGGTAG-TAGCACTAGTa--agaga-gg-a-g-gaggaagaggaagaggaagtgg 2480 ||||||||| | ||||||||||| |||| || | | ||||| ||||||||||| |||| Sbjct 2528 CGTGGTGGT-GCTAGCACTAGTAGCAGAGGTGGTAAGAGAGGAGGAGGAAGAGGAGGTGG 2586 Query 2481 aggtaaacgtgggagaggaagaTAG 2505 ||||||||||||||||||||||||| Sbjct 2587 AGGTAAACGTGGGAGAGGAAGATAG 2611 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 124313684754 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5