BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316625
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77100.1 | Symbols: | Peroxidase superfamily protein | chr1... 1552 0.0
> AT1G77100.1 | Symbols: | Peroxidase superfamily protein | chr1:28965772-28967066
REVERSE LENGTH=1011
Length=1011
Score = 1552 bits (840), Expect = 0.0
Identities = 956/1013 (94%), Gaps = 4/1013 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCGTAGAATACGAGAAGATATATCGATTAGTTTGTTTGGTCCGAAAATGATCACT 60
||||| ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||
Sbjct 1 ATGAGCCGTAGAATACGAGAAGATATATCAATTCGTTTGTTTGATCCCAAAATGATCACT 60
Query 61 GTTGCATTATTTCTAGTTTTGTTTTATTTTCATGATCAGTTAGGTTATTCGGTGGCACAA 120
|||||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||
Sbjct 61 ATTGCATTATTTCTAGTTTTGTTATATTTTCATGATCAATTAGGTTATTCAGCGGCACAA 120
Query 121 CTTCAGTTTGGATTCTACTCAGAAACATGTCCATCAGCAGAATCAATCGTTCGTGATGTT 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTCAGTTTGGATTCTACTCGGAAACATGTCCATCAGCAGAGTCAATCGTTCGTGATGTT 180
Query 181 GTTCAACATGCGGTGACCAACGACCCCGGAAAGGCTGCTGTCTTACTCCGTCTCCAGTTC 240
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 181 GTTCAACAGGCGGTGACCAACGACCCAGGGAAGGCTGCTGTCTTACTCCGTCTCCAGTTC 240
Query 241 CACGATTGCTTCGTTGAGGGTTGTGATGGGTCAATACTAATCAAGCATGATGGGAACGAT 300
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 CACGATTGCTTTGTCGAGGGTTGTGATGGGTCAATACTAATCAAGCATGGTGGGAACGAT 300
Query 301 GACGAAAGGTTTGCTGCGGGTAACGCGGGTGTGGCTGGTTTCGATGTTATAGACGAAGCC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GACGAAAGGTTTGCTGCGGGTAACGCGGGGGTGGCTGGTTTCGATGTTATAGACGAAGCC 360
Query 361 AAATCAGAGCTTGAACGTCATTGTCCGGG-GATTGTGTCTTGCGCCGACATCGTTGCTCT 419
|||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||
Sbjct 361 AAATCAGAGCTTGAACGTTTTTGTCCGGGCG-TTGTGTCTTGCGCTGACATCGTTGCTCT 419
Query 420 TGCTGCTAGAGACGCTATTGCTGAGGTAAAAGGACCATTTTATGAGGTTCCAACCGGTCG 479
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 420 TGCTGCTAGAGACGCTATTGCTGAGGCAAAAGGACCATTTTATGAAGTTCCAACCGGTCG 479
Query 480 GAGAGACGGTCGGATTGCAAATGTTGGTCATGCTACA-AACTTGCCAGATGTTCAAGATT 538
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 480 GAGAGACGGTCTGATTGCAAATGTTGATCATGCTA-AGAACTTGCCAGATGTTCAAGATT 538
Query 539 CCATAAGCACTTTGAAATCAAAATTTAGAGAAAAGGGGCTTTCGGATCAAGATCTTGTAC 598
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 539 CCATAAATACTTTGAAATCAAAATTTAGAGAAAAAGGGCTTTCAGATCAAGATCTTGTAC 598
Query 599 TTCTTAGTGCTGGTGCACATACTATTGGTACAACCGCTTGCTTCTTCGTCATACCACGTT 658
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 599 TTCTTAGTGCTGGTGCACATACTATTGGTACAACGGCTTGCTTCTTTGTCATACCACGTT 658
Query 659 TAGATGCTCAAGATCCTACCATAAATCCAGAATTCTTTCAAATCCTAAGGTCAAAATGTC 718
||||||||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||
Sbjct 659 TAGATGCTCAAGATCCTACGATAAACCCGGAATTTTTTCAAATCCTGAGGTCAAAGTGTC 718
Query 719 CCCAAGGCGGAGATGTTAATGTCAGGATTCCGTTGGACTGGGATAGCCAGTTTGTGTTTG 778
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CCCAAGGCGGTGATGTTAATGTCAGGATTCCGTTGGACTGGGATAGCCAATTTGTGTTTG 778
Query 779 ATGACCAAATCTTGCAAAACATCAAAAATGGCAGAGGTGTCATTCTATCGGACTCTGTCT 838
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 ATAACCAAATCTTCCAAAACATCAAAAATGGCAGAGGTGTCATTCTATCGGACTCTGTTT 838
Query 839 TGTACCAAGACAATAGTATGaaaaaaaTCATTGATTCGTACCTAGAAACTAATCAAAGTT 898
| ||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 839 TATACCAAGACAATAATATGAAGAAAATCATTGATTCATACTTAGAAACTAATCAAAGTT 898
Query 899 CAAAGGCTAATTTTGCTGCGGATTTTGTTAAAGCCATGGTAAAGATGGGTGCTATCGGAG 958
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 899 CAAAGGCTAATTTTGCTGCGGATTTCACTAAAGCCATGATAAAGATGGGTGCTATCGGAG 958
Query 959 TGAAAATCGGTGTTGAAGGAGAGATTAGACGTTTATGCAGTGCTACAAACTAG 1011
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAAAATCGGTGCTGAAGGAGAGATTAGACGTTTATGCAGTGCTACAAACTAG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5