BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316635
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 931 0.0
> AT1G77230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29016120-29019768 FORWARD LENGTH=2561
Length=2561
Score = 931 bits (504), Expect = 0.0
Identities = 608/657 (93%), Gaps = 12/657 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGCGTAGCTCTATCGAATTTC 60
||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct 10 ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGTTTGGTTTTATCGAATTTC 69
Query 61 CCGGATCTTCCTTTCGAGAAGGATGATGCTCCAGAGTCCCAATCTCATCGTCAGTTTCGT 120
||||||||||||||||||||||||||| ||| |||||| |||||||||| ||| ||||||
Sbjct 70 CCGGATCTTCCTTTCGAGAAGGATGATTCTCTAGAGTCTCAATCTCATCTTCATTTTCGT 129
Query 121 GAAGATGATATTGGTCGTAGACAAATTACCGATCAATTGGACTCGTC-----------GG 169
||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 130 GAAGATGATATTGATCGTAGACAAACTACCGATCAATTGGACTCGTCGGAGGTTGGAGGG 189
Query 170 -ATCATCCTCGTGAGAAATTCGATCTCGAAGCTAAGGATCTGGCAGAGTCCATAAGAGCC 228
|||||||||||||||| |||||| ||||||||||| | || ||||||||||| ||||||
Sbjct 190 AATCATCCTCGTGAGAATTTCGATGTCGAAGCTAAGAAACTCGCAGAGTCCATTAGAGCC 249
Query 229 CAAGGAGATAAACTAGCTGAGGAAGGTAAATACCAGGAGGCTCTGGGGAAATGGGAAGCT 288
|||||||| || | ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 250 CAAGGAGACAAGTTCGCTGAGGAAGGAAAATACCAGGAGGCTCTAGGGAAATGGGAAGCT 309
Query 289 GCTCTTAATCTTCTTCCCGAAGATGCAGTCCTGCATGAACAGAAAGCACAAGTGTTACTT 348
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 310 GCTCTTAATCTTGTTCCCGAAGATGCAATCCTGCATGAACAGAAAGCACAAGTGTTACTT 369
Query 349 GAGCTTGGTGATGCATGGAAAGCACTCAAGGCTGCAACACGAGCTACTGAGATAGATCCA 408
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 370 GAGCTTGGTGATGCATGGAAAGCACTCAAAGCTGCAACACGAGCTACTGAGATAGATCCA 429
Query 409 TCTTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAACCGGAC 468
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 TCGTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAGCCGGAC 489
Query 469 AGTGCTATCAGGAGTTTTGAAAGTGCATTATCGATCAATGCGGATTCCAGAGAGGCGAAC 528
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 490 AGTGCTATCAGGAGTTTTGAAAGTGCATTATTGATCAATGCGGATTCCAGAGAGGCTAAA 549
Query 529 GACGATCTAAAAACTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGA 588
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GACGATCTTAAAAGTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGA 609
Query 589 CAGGACACCGACACTAAACGTTTTGTGGTCGACGACAAGAACATAGAGCCAAACTAA 645
|||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 610 CAGGACACCGACACTACACGATTTGTGGTCAACGACAAGAACATAGAGCCAAACTAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5