BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316646

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   621    1e-177


> AT1G77350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); 
Has 141 Blast hits to 141 proteins in 57 species: 
Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants 
- 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 
| chr1:29070289-29071899 FORWARD LENGTH=813
Length=813

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 359/370 (97%), Gaps = 2/370 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAGGAGCTGTTGGAACATCGATGCTAGGGTCTCTTATTGTGTTTACAGTGATCCTC  60
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  91   ATGGCAGGAGCTGTTGGAACATCAATGTTAGGGTCTCTTATTGTGTTTACAGTGATCCTC  150

Query  61   TCGCTTCAAGAAATTTACAGAGGGAAATTAGCTTCTTCAGAGCTGTTCACGATCCTTGGT  120
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  151  TCGCTTCAGGAAATTTACAGAGGAAAATTAGCTTCTTCAGAGCTGTTCACGATCCTTGGT  210

Query  121  GGATTCACAAGCTCTCTCCTCTTTTTGTTTTCTCTCACTTTCATTGGCAATTTTCAGGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  211  GGATTCACAAGCTCTCTCCTCTTTTTGTTTTCTCTCACTTTCATTGGAAATTTTCAGGAA  270

Query  181  TCTTCTGGCATCAAGAGTGGTTGGGGTGCAGTCATTCTTGCAGAAATCATAGCTCTTATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  271  TCTTCTGGCATCAAGAGTGGTTGGGGTGCAGTCATTCTTGCAGAAATCATAGCTCTTATC  330

Query  241  GCTGCTAGCACGGTTCATCGGGTTTGTATCACAACCTGTTTCTTGTTCTCTGCTGGGCTA  300
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  331  GCTGCTGGCACGGTTCATCGGGTTTGTATCACAACCTGTTTCCTGTTCTCTGCTGGGCTA  390

Query  301  TTGTACGAGGTGAACAAGATCTCTGGATACATGCTATCCAAAACCGAGTCCAAA-TCTAA  359
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  391  TTGTACGAGGTGAACAAGATCTCTGGATACATGCTATCCAAAACCGAGTC-AAAGTCTAA  449

Query  360  GAGATACTGA  369
            |||| |||||
Sbjct  450  GAGACACTGA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5