BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316675
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77630.1 | Symbols: | Peptidoglycan-binding LysM domain-con... 2034 0.0
AT1G21880.2 | Symbols: LYM1 | lysm domain GPI-anchored protein ... 811 0.0
> AT1G77630.1 | Symbols: | Peptidoglycan-binding LysM domain-containing
protein | chr1:29173457-29175530 FORWARD LENGTH=1684
Length=1684
Score = 2034 bits (1101), Expect = 0.0
Identities = 1221/1280 (95%), Gaps = 4/1280 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACCCAGAAAAACCCTTATTTCTGTTTCTAATTTTAGCTTCAAGCTTAGCATCA 60
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 270 ATGAAGAATCCAGAAAAACCCTTACTTCTGTTTCTAATTTTAGCTTCAAGCTTAGCATCA 329
Query 61 ATGGCGACTGCGAAATCCACAATAGAGCCTTGCTCCACTAAAGACACTTGTAACTCATTG 120
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 330 ATGGCGACTGCAAAATCCACAATAGAGCCTTGCTCCAGTAAAGACACTTGTAACTCATTG 389
Query 121 CTAGGCTACACGCTCTACACCGACCTCAAAGTCACAGAAGTCGCTTCTCTCTTCCAAGTA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CTAGGCTACACTCTCTACACCGACCTCAAAGTCACAGAAGTCGCTTCTCTCTTCCAAGTA 449
Query 181 GACCCAGTCTCGATGCTTCTCTCTAACTCCATTGACATCTCTTACCCAGACGTCGAGAAC 240
|||||||| || |||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 450 GACCCAGTTTCAATGCTTTTGTCTAACTCCATTGATATCTCTTACCCAGACGTCGAGAAC 509
Query 241 CATGTCCTTCCCGCTAAGCTCTTCCTCAAAATCCCAATCACTTGCTCCTGTGTCGACGGA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 510 CATGTCCTTCCCGCTAAGCTCTTCCTCAAGATCCCAATCACTTGCTCCTGTGTCGACGGA 569
Query 301 ATTC-GAAAATCCCTCTCGACCCATTACAAGACTCGTACTTCCGACACGCTAGGATCGAT 359
| || |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 570 A-TCAGAAAATCCCTCTCGACTCATTACAAGACTCGTACTTCTGACACACTAGGATCGAT 628
Query 360 CGCTGACTCTGTTTACGGTGGTCTGGTCTCTCCGGAGCAGATTCAGGTCGCGAATTCGGA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 629 TGCTGACTCTGTTTACGGTGGTCTGGTCTCTCCGGAGCAGATTCAGGTCGCGAATTCAGA 688
Query 420 AACTGACCTCTCGGTTCTCGATGTAGGTACAAGGCTTGTGATTCCATTGCCTTGCGCTTG 479
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 689 GACTGACCTTTCGGTTCTCGATGTAGGTACAAAGCTTGTGATTCCATTGCCTTGCGCTTG 748
Query 480 CTTCAATGGTACCGATGAATCTCTTCCGGCGCTTTATCTATCTTACGTTGTGAGGGGAAT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 749 CTTCAATGGTACCGATGAATCTCTTCCGGCGCTTTATCTATCTTACGTTGTGAGAGGAAT 808
Query 540 CGACACAATGGCTGGAATCGCAAAGAGATTCTCGACCACTGTTACGGATTTAACAAATGT 599
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 809 CGACACTATGGCTGGAATCGCAAAGAGATTCTCGACCTCTGTTACTGATTTAACAAACGT 868
Query 600 GAATGCGATGGGAGCTCCTGATATCAATCCTGGTGATATCCTCGCTGTCCCATTGCTTGC 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 869 GAATGCTATGGGAGCTCCTGATATCAATCCTGGTGATATCCTCGCTGTCCCATTGCTAGC 928
Query 660 TTGTAGTTCAAATTTCCCCAAATACGCTACGGATTACGGATTGATCATTCCAAACGGAAG 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 929 TTGTAGTTCAAATTTCCCCAAATACGCTACGGATTACGGATTAATCATTCCAAATGGAAG 988
Query 720 CTATGCTCTCACCGCAGGCCACTGTGTACAATGCAGCTGTGTTCTCGGAAGCCGCAGTAT 779
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 989 CTATGCTCTCACTGCAGGCCACTGTGTACAATGCAGCTGTGTTCTCGGAAGCCGAAGTAT 1048
Query 780 GTATTGTGAGCCTGCTTCTTTAGCAGTCTCTTGTTCCAGTATGCGATGTAGAAACAGCAA 839
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 1049 GTATTGTGAGCCTGCTTCTATATCAGTCTCTTGTTCCAGTATGAGATGTAGAAACAGCAA 1108
Query 840 CTTCATGCTCGGGAACATCACTTCGCAGCAGAGTAGCTCGGGTTGTAAACTTACTACTTG 899
||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1109 CTTCATGCTTGGTAACATTACTTCGCAGCAGAGTAGCTCCGGTTGTAAACTTACTACTTG 1168
Query 900 TAGTTACAACGGTTTCGCTAGCGGCACTATCTTGACCACGTTATCCATGTCTCTTCAACC 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1169 TAGTTACAACGGTTTCGCTAGCGGCACTATCTTGACCACGTTGTCCATGTCTCTTCAACC 1228
Query 960 TCGATGCCCTGGACCGCAACAATTAGCACCGCTTATAGCCCCGCCTGATACTGTTCCAAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1229 TCGATGCCCTGGACCGCAACAATTAGCACCGCTTATAGCCCCGCCTGATAATGTTCCAAA 1288
Query 1020 GGAACTGATGTATCTACCTTCACCTTCACCTTCGCCTTCACCAGAGTTTGATGATATTGT 1079
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1289 GGAACTGATGTATCTACCTTCACCTTCACCTTCGCCATCACCAGAGTTTGATGATATTGC 1348
Query 1080 TGGTGGAGGATCATCCATAGCCGCAGTCCCCGCGGCTTCACCCAGG-GGACCCACGGTTT 1138
||||||||||||||| |||||||||||||||||||||||||| || ||| | |||||||
Sbjct 1349 TGGTGGAGGATCATCTATAGCCGCAGTCCCCGCGGCTTCACCT-GGAGGAGCTACGGTTT 1407
Query 1139 CTTCAAGCAGTTCAATACCGGGCAATCCAGCTAATGGTCCAGGCGGGAGTATTTCTATAG 1198
||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1408 CTTCAAGCAATTCAATCCCGGGTAATCCAGCTAATGGTCCAGGCGGAAGTATTTCTATAG 1467
Query 1199 CTTCTTGCCCATTGAGCTATTACTCATTCATTGCGTTTCTCATCTCCATTGCTTCTTGCT 1258
||||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 1468 CTTCTTGTCCATTGAGCTATTACTCATTCATTGCGTTACTCATCCCCATTGGTTCTTGCT 1527
Query 1259 CTTTTGTTTTCTTAGTTTGA 1278
||||||||||| |||||||
Sbjct 1528 TTTTTGTTTTCTAAGTTTGA 1547
> AT1G21880.2 | Symbols: LYM1 | lysm domain GPI-anchored protein
1 precursor | chr1:7680481-7682641 FORWARD LENGTH=1574
Length=1574
Score = 811 bits (439), Expect = 0.0
Identities = 841/1031 (82%), Gaps = 44/1031 (4%)
Strand=Plus/Plus
Query 41 TAGCTTCAAGCTT-AGCATCAATGGCGACTGCGAAATCCACAATAGAGCCTTGCTCCA-C 98
||||||| ||||| | | || | ||||| |||||||| ||||| ||||||||||| | |
Sbjct 258 TAGCTTCGAGCTTAACCTTC-ACAGCGACAGCGAAATCAACAATCGAGCCTTGCTCAAGC 316
Query 99 TAAAGACACTTGTAACTCATTGCTAGGCTACACGCTCTACACCGACCTCAAAGTCACAGA 158
|| |||||||| ||| | || || |||||||| ||||||||||||||||||||| ||||
Sbjct 317 -AACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTCTCAGA 375
Query 159 AGTCGCTTCTCTCTTCCAAGTAGACCCAGTCTCGATGCTTCTCTCTAACTCCATTGACAT 218
|||||| ||||||||||||||||||||| |||| || ||| | ||||| |||| || ||
Sbjct 376 AGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTATCCTTTTAGCTAACGCCATCGATAT 435
Query 219 CTCTTACCCAGACGTCGAGAACCATGTCCTTCCCGCTAAGCTCTTCCTCAAAATCCCAAT 278
|||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||
Sbjct 436 CTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAATCCCAAT 495
Query 279 CACTTGCTCCTGTGTCGACGGAATTC-GAAAATCCCTCTCGACCCATTACAAGACTCGTA 337
|||||||||||| ||||||||||| | ||||||| |||| ||||||||||| || || |
Sbjct 496 CACTTGCTCCTGCGTCGACGGAAT-CAGAAAATCTGTCTCTACCCATTACAAAACCCG-A 553
Query 338 C-TTCCGACACGCTAGGATCGATCGCTGACTCTGTTTACGGTGGTCT-GGTCTCTCCGGA 395
| ||| |||| ||||||||||| ||||||||||||||||| || || ||||||| | ||
Sbjct 554 CCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGG-CTTGGTCTCTGCTGA 612
Query 396 GCAGATTCAGGTCGCGAATTCGGA-AACTGACCTC-TCGGTTCTCGATGTAGGTACAAGG 453
|||||| |||| || || |||| || ||||| | ||| | || ||||| || || ||
Sbjct 613 GCAGATCCAGGAAGCTAACTCGGTGAA-TGACC-CGTCGCTGCTTGATGTTGGGACTAGT 670
Query 454 CTTGTGATTCCATTGCCTTGCGCTTGCTTCAATGGTACCGATGAATCTCTT--CCGGC-G 510
||||| || || |||||||| ||||| |||||||| ||||| ||| |||| ||||| |
Sbjct 671 CTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGAC-AAT-TCTTTGCCGGCTG 728
Query 511 CTTTATCTATCTTACGTTGTGAGGG-GAATCGACACAATGG-CTGGAATCGCAAAGAGAT 568
||||| | || || ||||||| || || | || ||| ||| | |||||||| | ||| |
Sbjct 729 -TTTATTTGTCGTATGTTGTGAAGGAGATT-GATACATTGGTC-GGAATCGCGAGGAGGT 785
Query 569 -TCTCGACCACTGTTACGGATTTAACAAATGTGAATGCGATGGGAGCTCCTGATATCAAT 627
| ||||| ||| |||| ||||| | ||||||||||| ||||||||||||||| | | |
Sbjct 786 AT-TCGACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGT 844
Query 628 CCTGGTGATATCCTCGCTGTCCCATTG-CTTGCTTGTAG-TTCAAATTTCCCCAAATACG 685
|||| ||||| |||||||| || ||| | |||||| | |||||| ||||||| |||||
Sbjct 845 TCTGGAGATATTCTCGCTGTTCCTTTGTCA-GCTTGT-GCTTCAAAGTTCCCCAGATACG 902
Query 686 CTACGGATTACGGATTGATCATTCCAAACGGAAGCTATGCTCTCACC-GCAGGCCACTGT 744
|| |||||| ||||||||| ||||||| || ||||||||||| | | ||||| ||||||
Sbjct 903 CTTCGGATTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCT-AGCTGCAGGTCACTGT 961
Query 745 GTACAATGCAGCTGTGTTCTCGGAAGCCGCAGTATGTATTGTGAGCCTGCTTCTTTAGCA 804
|| ||||||||||||| || || ||||||| | ||||||||||||||||||| ||||
Sbjct 962 GTGCAATGCAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCC 1021
Query 805 GTCTCTTGTTCCAGTATGC-GATGTAGAAACAGCAACTTCATGCTCGGGAACATCACT-T 862
|||||||| || ||||||| | ||||||||||||||| |||||||||| |||||||| |
Sbjct 1022 GTCTCTTGCTCAAGTATGCAG-TGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGT 1080
Query 863 CGCAGCAGAGTAGCTCGGGTTGTAAACTTACTACTTGT-AGTTACAACGGTTTCGCTAGC 921
|||||||| |||| | || ||||| |||| |||||| | |||||||||| | || | |
Sbjct 1081 -GCAGCAGACTAGCGCTGGCTGTAATGTTACAACTTGTGA-TTACAACGGTATAGCCAAC 1138
Query 922 GGCACTATCTTGACCACGTT-ATCCATGTCTCTTCAACCTCGATG-CCCTGGACCGCAAC 979
||||||||||| |||| | | | ||| |||||||||||||||||| ||| ||||| ||||
Sbjct 1139 GGCACTATCTTAACCATGCTGA-CCAGGTCTCTTCAACCTCGATGTCCC-GGACCTCAAC 1196
Query 980 AATTAGCACCGCTTATAGCCCCGCCTGATACTGTTCCAAAGGAACTGATGTAT-CTACCT 1038
|||| || |||||| |||| || || ||||||||||| | ||| | |||||| | |||
Sbjct 1197 AATTTGCGCCGCTTCTAGCTCCACCAGATACTGTTCCTAGGGATGTAATGTATGC-ACCA 1255
Query 1039 TCACCTTCACC 1049
||||||||||
Sbjct 1256 GCACCTTCACC 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5