BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316679

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77682.1 | Symbols:  | Plant thionin family protein | chr1:2...   427    2e-119


> AT1G77682.1 | Symbols:  | Plant thionin family protein | chr1:29196543-29197071 
REVERSE LENGTH=529
Length=529

 Score =  427 bits (231),  Expect = 2e-119
 Identities = 283/307 (92%), Gaps = 8/307 (3%)
 Strand=Plus/Plus

Query  1    ATGGCAGCAAATGGAAGAGTGATCATAATAGCACTGCTAATGGTGGCTATGGTAATGAAC  60
            ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  47   ATGGCAGCAAATGGACGAGTGATCATAATAGCAATGCTAATGGTGGCTATGGTAATGAAC  106

Query  61   ATGACATGGTGCGTCAACAGCAAAGGCTTTGTAAATTTAGGAATTAGTCCTGAAGAACTA  120
            ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  107  ATGACATGGTGTGTCAACAGCAAAGGCTTTGTTAACTTAGGAATTAGTCCTGAAGAACTA  166

Query  121  CAGAGTTGCATCAAGGCTTGTATTCCAGAACAATGCATGCCCGAGGCTAATAATCTAACC  180
            ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  167  CAGAGTTGCATCAAGACTTGTATTCCGGAACAATGCATGCCCGAGGCTAATAATCTGACC  226

Query  181  GTGTGTGAGAAAGCATGTCACAAATATTGCAACCGACCTGCT-T-TC----AAGTCTTAC  234
            |||||||||||||||||||||||||||||||||||||||||| | ||    ||| |  ||
Sbjct  227  GTGTGTGAGAAAGCATGTCACAAATATTGCAACCGACCTGCTATGTCGTTCAAGCCCAAC  286

Query  235  TATGTCGTTCCTCG-AGATCGAAATGGTGGTGGGTTTATAAGATCTGCTTTTTGCAAGCT  293
            |||||||||||| | |||| |||||| || ||||||||||| | ||||||||||||||||
Sbjct  287  TATGTCGTTCCT-GTAGATGGAAATGATGTTGGGTTTATAAAAGCTGCTTTTTGCAAGCT  345

Query  294  ATGGTGT  300
            |||||||
Sbjct  346  ATGGTGT  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5