BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316691
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77790.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1410 0.0
> AT1G77790.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:29250692-29251976 REVERSE LENGTH=1041
Length=1041
Score = 1410 bits (763), Expect = 0.0
Identities = 916/991 (92%), Gaps = 5/991 (1%)
Strand=Plus/Plus
Query 7 CTCCTATCCATCCAAATCTTTTGCCCAGCTGGTGTTGCAGGGGACATCACCGGAGTTTGT 66
||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct 40 CTCCTGTCCATCCAAATCTTTTGCACAGCGGGTGTTGCAGGGGACATCACCGGAGATTGT 99
Query 67 TACGGCCGGAACGGCAACAATCTCCCAACGCCGGCAGATACAGTAGCTTTATACAAAACC 126
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 100 TACGGCCGGAACGGCAACAATCTCCCAACGCCGGCAGATACAGTTGCTCTATACAAAAGC 159
Query 127 AACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCCGACATGCTCGAAGCTCTCCGT 186
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 160 AACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCAGACATGCTCGAAGCGCTTCGT 219
Query 187 GGCTCAGGTCTCTCCGTCGCGTTTGGTCCACGAAACGAAGAAATCCAATCCCTAGCCCAA 246
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 220 GGCTCAGGTCTCTTAGTCGCGTTTGGTCCACGAAACGAAGATATCCAATCCCTAGCTCAC 279
Query 247 GATCCAGCCGCCGCAACAAATTTCGTCGCCACCTGGATCACACCTTACCAAAACGACGTC 306
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 280 GATCCAGCCGCCGCAACAAATTTCGTCTCCACCTGGATTACACCTTACCAAAACGACGTT 339
Query 307 GCAATCAAATGGATCACAATCGGTAACGAAGTCTTCCCCGGAGAAATCGCTCCATTCGTC 366
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 340 GCAATTAAATGGATCACAATTGGTAACGAAGTCTTCCCCGGAGAAATCGCTCAATTTGTT 399
Query 367 GCCGCCGCGATCAGAAACGTCAACGCCGCGCTAACGAATTCCGGCGTCACAGGAATAGCC 426
||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 400 GCCGCCGCGATAAAAAACGTCAACGTCGCGCTAACGAATTCCGGCGTCACAGGAATCTCT 459
Query 427 GTCACAACGGTTTTAGCTATGAACGCGTTGACCAATTCATATCCACCTTCAGCTGCAACA 486
||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||
Sbjct 460 GTCACGACGGTTTTAGCTATGACCGCGTTGACCAATACATATCCACCTTCCGCTGCAACA 519
Query 487 TTCCTCCCAGATCTAACCGAGATCATGACGGAGATTTCATCGATACTCTCTCAGACGAAT 546
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 520 TTCCTCCCAGATCTAACCGAGATCATGACGGAGATTACATCGATACTCTCAGAGACGAAT 579
Query 547 TCGCCTCTCATGACCAATATCTACCCGTACTTCGCATACGCGTCAGATCCTTATCACATC 606
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 580 TCGCCTCTCATGACGAATATCTACCCGTACTTCGCATACGCGTCAGATCCATATCACATC 639
Query 607 TCACTCGATTACGCTAGTTTCAAATCCGATACGCCGGTAGTGATCGACGGTGATTTGAAG 666
||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |
Sbjct 640 TCACTCGATTACGCTAGTTTCAAATCCAATACACCGGTAGTGATAGACGGTGATTTGTAT 699
Query 667 TACACCAACATGTTCGAGGCGATGGTGGACGGATTCAATGCGGCGTTGGAGAAGATCAAC 726
|||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 700 TACAACAATATGTTTGAGGCGATGGTTGACGGATTCAATGCGGCGTTGGAGAAGATCAAC 759
Query 727 GCCGGAAATGTGGTGGTGATGGTGGCGGAGTCTGGATGGCCGACGGAGGGAAATCCACCG 786
|||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 760 GCCGCAAACGTGGTGGTGATGGTGGCGGAGACGGGATGGCCGACGGAGGGAAATCCACCG 819
Query 787 TATACGAGTGTTGATAACGCCAAGGCCTACAATTTGGGGATTAGGACATGTGGGGGATCT 846
| ||||||||||||||||| |||||||| ||| |||||||| | ||||||||| |||||
Sbjct 820 CACACGAGTGTTGATAACGCGAAGGCCTATAATATGGGGATTCGAACATGTGGGAGATCT 879
Query 847 G-A-A-CGGAAGCGGACGCCTCGCCGGCCGGAGACGCCGGTGGACGTGTTTCTATTCGCG 903
| | | |||||||||||||| ||||||| | |||||||| |||||||||||||||||
Sbjct 880 GCAGAACGGAAGCGGACGCCCCGCCGGCAAAACACGCCGGTTGACGTGTTTCTATTCGCA 939
Query 904 ATGTTCAGAGAGAATCAGAAGGATGGTCCGGTGGAGCAGAGCTTT-GGAATCTTTGCACC 962
||||||| ||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 940 ATGTTCAAAGAAAATCAGAAGGATGGTCCGGTGGAACAGAG-TTTCGGAATCTTTGCACC 998
Query 963 TGATATGACTCCAGTCTACGATCTCTTTTGT 993
|||||||||||||||||||||||| ||||||
Sbjct 999 TGATATGACTCCAGTCTACGATCTTTTTTGT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5