BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316696
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77855.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1493 0.0
AT1G22030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein B... 435 5e-121
> AT1G77855.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G22030.1);
Has 120 Blast hits to 120 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29277166-29278518
REVERSE LENGTH=1162
Length=1162
Score = 1493 bits (808), Expect = 0.0
Identities = 913/963 (95%), Gaps = 9/963 (1%)
Strand=Plus/Plus
Query 1 ATGGATCAGTCTTGTACAAACTCAGTAAATGGATTCTACTCGTTTCTAAACAGATCAATG 60
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 131 ATGGATCAGTCTTGTTCAAACTCAGTAAACGGATTCTACTCGTTTCTAAACAGATCAATG 190
Query 61 GAAGATCTCGAAAGAGTTTATCTTTCCAACAACTTCATGTCCTTACAGTTTCTACAGAGA 120
|||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 191 GAAGATCTCGAAAGGGTTTATATCTCCAACAACTTCATGTCCTTACAGTTCCTACAGAGA 250
Query 121 GTGATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTTGTCCAGAAACTTAAC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GTCATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTTGTCCAGAAACTTAAC 310
Query 181 CTCCCTGTCGGTGACAAGTGGCTCGACGACTACATGGACGAAACCTCCAAGCTTTGGGAC 240
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 311 CTCCCTGTCGGTGACAAGTGGCTTGACGACTACATGGACGAAACTTCCAAGCTTTGGGAC 370
Query 241 GTCTGCCACGTCATCAAATCCGCTATCTCCTCCATCGAAAGCTTTTGCTCCTCCGCGATT 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 371 GTCTGCCACGTCATCAAATCCGCTATCTCCACCATCGAAAGCTTTTGCTCCTCCGCTATC 430
Query 301 TCCATTACCTCCACCCTCGACGGCCACTACCACCACCGTCGTCTCCTCTCCCCTCAAATT 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 431 TCCATCACCTCCACCCTCGACGGCCACTACCACCACCGTCGTCTCCTCTCCCCTCAGATT 490
Query 361 TCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATAGAAGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATAGAAGAA 550
Query 421 GAAAACAGAGCATTGATGGAGAATCGTATTCAAAGGTTTCCGTTTTGGTCGGAGCAAGTT 480
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 551 GAAAACAGAGCATTAATGGAGAATCGTATTCAAAGGTTTCCTTTTTGGTCGGAGCAAGTT 610
Query 481 ACTACGACGGCGATGGAGTCTTCCAAGATACAAAACGGATTCAGCGGTTTCCGAGGAGTG 540
|||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 611 ACTACGACGGGGATGGAGTCTTCCAAGATACAGAACGGTTTCAGCGGTTTCAGAGGAGTG 670
Query 541 ATGAACACGATGAAGAACATAAACTCGTTACTTCTCGTGATCTTGATGCAAGGTCTTGTT 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 ATGAACACTATGAAGAACATAAACTCGTTACTTCTCGTGATCTTGATGCAAGGTCTTGTT 730
Query 601 TATTATATCCCCGGAGACACGACGGCAGCGACGGTTCCGCCGGGAACGATGGTGAGGTTA 660
||||| || |||||||||||||||| ||||| |||| |||||| ||||||||
Sbjct 731 TATTACATTCCCGGAGACACGACGG---------TTCCGACGGGGACGATGATGAGGTTA 781
Query 661 AAGCAGAGAGTGGCGGCGGAAATGGAGAGGATTGGGATGAGGAAAGGGATGATGATGTAT 720
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 782 AAGCAGAGAGTGGCGGCGGAAATGGAGAGGATAGGGGTGAGGAAAGGAATGATGATGTAC 841
Query 721 GAGTATAGGAGAAGCAAGACGGCGATGGAGGAGCTTAAGACGGAGCTGGAACGGCGGTGT 780
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 842 GAGTATAGGAGAAGCAAGACGGCGATGGAGGAGCTTAAGGTGGAGCTGGAACGGCGGTGT 901
Query 781 TGCggaggaggacgagaggaggaggcggcggagaaggggttgagagaaagagttgagaAT 840
||||| || ||| ||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 902 TGCGGCGGCGGAGGAGAGGAGGAGGCGGTGGAGAAGGGGTTGAGAGAGAGAATTGAGAAT 961
Query 841 TTGAAAGGGAGTATTGGGAATTTGAGGAATGGAACAGAGAGTATTGTTGCTCAGATTGAT 900
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TTGAAAGGAAGTGTTGGGAGTTTGAGGAATGGAACAGAGAGTATTGTTGCTCAGATTGAT 1021
Query 901 GATTTCTTTGATGATATTGTTGATGGTAGGAAAATGCTTTTGGATTATTGTAGCCACAGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GATTTCTTTGATGATATTGTTGATGGTAGGAAAATGCTTTTGGATTATTGTAGCCACAGG 1081
Query 961 TGA 963
|||
Sbjct 1082 TGA 1084
> AT1G22030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G77855.1); Has
99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7759164-7760556
REVERSE LENGTH=1316
Length=1316
Score = 435 bits (235), Expect = 5e-121
Identities = 507/632 (80%), Gaps = 43/632 (7%)
Strand=Plus/Plus
Query 1 ATGGATCAGTCTTGTACAAACTCAGTAAATGGATTCTACTCGTTTCTAAACAGATCAATG 60
||||||| ||| ||| |||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 142 ATGGATCCGTCCTGTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 201
Query 61 GAAGATCTCGAAAGAGTTTATCTTTCCAACAACTTCATGTCCTTACAGTTTCT-ACAGAG 119
|||||||||||||||||||||||||| ||||| ||||||||| |||| || || ||||||
Sbjct 202 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTT-CTTACAGAG 260
Query 120 AG-TGATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTT-GTCCAGAAACTT 177
|| | |||||||||| | |||||||||||||||||||| || ||| || || ||||||
Sbjct 261 AGCTC-TCTGTCTTCTCCGTACCTCTCACTCTCATCTCACTCT-CTTAGTTCAAAAACTT 318
Query 178 -AACCTCCCTGTCGGTGACAAGTGGCTCGACGACTACATGGACGAAACCTCCAAGCTTTG 236
||| |||| ||||||||||| |||||||| || || |||||||||| |||||| |||||
Sbjct 319 CAACTTCCC-GTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCTCCAAACTTTG 377
Query 237 GGACGTCT-GCCACGTCATCAAATCCGCTATCTCCTCCATCGAAAGCTTTTGCTCCTCCG 295
||| | || | | ||||||||||||||| |||||||| |||||| ||| | |||| |||
Sbjct 378 GGAAG-CTTGTCTCGTCATCAAATCCGCCGTCTCCTCCGTCGAAAACTTCTCCTCCGCCG 436
Query 296 CGATTTCCATTACCTCCACCCTCGACGGCCACTACCACCACCGTCGTCTCCTCTCCCCTC 355
|| ||| || | ||| | |||| || | ||||||||||| ||||| ||
Sbjct 437 -GA-----ATT---TCGA---TCG-CTTCCAC--CCTCGACCGTCGTCTC-TCTCC--TC 478
Query 356 AAATTTCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATAG 415
| |||| || ||||||||| | |||||||| |||||||| ||||||||| | |||||||
Sbjct 479 AGCTTTCTCGTCAGGTGATAAGGGCGATATCAGGATGTAGAAGAGAAGCGATAGGGATAG 538
Query 416 AAGAAGAAAACAGAGCATTGATGGAGAATC-GTA-TTCAAAGGTTTCCGTTTTGGTCGGA 473
| ||||||||||||||||| |||||||| | | | |||||||||||||||||||||||||
Sbjct 539 AGGAAGAAAACAGAGCATTAATGGAGAA-CAG-AGTTCAAAGGTTTCCGTTTTGGTCGGA 596
Query 474 GCAA--GTTACTACGACGGCGATGGAGTCTTC--C-AAGATACAAAACGGATTCAGCGGT 528
||| || | |||||||||||||||| || | ||| |||||||||| ||||| |||
Sbjct 597 ACAAACGT--CGGCGACGGCGATGGAGTCGTCGACGAAGTTACAAAACGGGTTCAGTGGT 654
Query 529 TTCCGAGGAGTGATGAACACGATGAAGAACATAAACTCG-TTACTTCTCGTGATCTTGAT 587
|| || || ||| | || ||| || |||||| | ||| || || || || | || ||
Sbjct 655 TTTCGCGGCGTGCTTTACGCGACGAGGAACATGAGTTCGCTT-CTCCTTATGGTTTTAAT 713
Query 588 GCAA-GGTCTTGTTTATTATATCCCCGGAGAC 618
| || ||||| || || | | | |||||||||
Sbjct 714 G-AACGGTCTCGTCTACTGTTTTCCCGGAGAC 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5