BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316706
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1024 0.0
> AT1G77960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G28630.4);
Has 13187 Blast hits to 6837 proteins in 407 species: Archae
- 0; Bacteria - 447; Metazoa - 4509; Fungi - 1333; Plants
- 399; Viruses - 45; Other Eukaryotes - 6454 (source: NCBI
BLink). | chr1:29310057-29313571 REVERSE LENGTH=1673
Length=1673
Score = 1024 bits (554), Expect = 0.0
Identities = 821/942 (87%), Gaps = 49/942 (5%)
Strand=Plus/Plus
Query 259 CATcaacaccagcaccaacaacatctccaacaccaga-accagtaccagcaccagcacca 317
||||||||||| |||||| | || ||| ||||| | |||| |||||| ||||||||||
Sbjct 443 CATCAACACCAACACCAATACCAGAACCAGCACCA-ACACCAATACCAGAACCAGCACCA 501
Query 318 gcaccag-GTCGT---ACAGCAACAACGACATCAATTAAGCAATTCGCATGAGACGTGGT 373
||||| | || || ||| ||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct 502 GCACC-GTGTTGTACAACAACAACAACAACAACAACTAATCAATTCGCATGAGACGTGGT 560
Query 374 TACAGGATAATTTATCAAACATGTTGAATACTATT---CAGGAGTCGAGTGTTTTTACAG 430
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 561 TACAGGATAAGTTATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAA 620
Query 431 GGAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGAAAATAATGGATTTGCACATCCAA 490
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 621 GGAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCACATCCAA 680
Query 491 CTGTGACTAATTCTCCAATTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTGATCCCTC 550
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 681 CTGTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTGATACCTC 740
Query 551 AAGGCCGTTCTAATGCATTTGGATCACTTTTTCCTCATGCTAATTC-A-CCAAACAGGTC 608
|| ||||||||||||||||||||||||||||||||| ||| | | || ||| |
Sbjct 741 AACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTA-TGGGATCCGCT-AGGCC 798
Query 609 GCAAAACTATATGCCATATCAGACGCCTCATCAACATGTC-GCTTCTTCTTTTGGCATGT 667
|| |||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||
Sbjct 799 ACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAG-TTCTTCCTTTGGCATGT 857
Query 668 ATCCTCACCAACCGCCCCCACCAGTTTTTG-CCAGTAGGCAAAATGTACCTCCCAATTTA 726
|||| || ||||||| ||||||||| |||| || |||||||||||| |||||||||| ||
Sbjct 858 ATCCACAGCAACCGCGCCCACCAGTGTTTGTCC-GTAGGCAAAATGAACCTCCCAATATA 916
Query 727 AGGATGGTTAACAATT-TAGCTATGATGAGGACACATCCTTTACACAATCAAACAAATAT 785
||||||||||||||| | ||| ||| |||| |||||| ||||| ||||||||||||||
Sbjct 917 AGGATGGTTAACAATAAT-GCTCTGACCAGGATACATCCGTTACAAAATCAAACAAATAT 975
Query 786 GATCCCTACCTTTAATGCTGTTCCCCAACGTAACATTCCATCCACCATACCCAGACCTCA 845
||||||| |||||||||||||||||||||||| | | || ||| || |||||||
Sbjct 976 GATCCCTCCCTTTAATGCTGTTCCCCAACGTA-C---C-AT--ACC---CC--GACCTCA 1023
Query 846 AATGTCTTCGAGATT-TAT-C-AGGCAACATGGCGGTATGCAAACATCCGTGAATCAGTC 902
||||||||| ||||| | | | |||||||||||||||||||||||||| |||||||||||
Sbjct 1024 AATGTCTTCTAGATTATTTACCAGGCAACATGGCGGTATGCAAACATCGGTGAATCAGTC 1083
Query 903 TCCATGGAGGTTTAGGTTACCCAACATTAACAATCGTCAGATGCCTATACGTCCAAACGC 962
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1084 TCCATTGAGGTTTAGGTTACCCAACATTAACAATCGTCAGGCCCCTGTACGTCCAAACGC 1143
Query 963 AAACGCAATCATACCTCCACAGGGTGAAATTTTAGGATGTCGACGATGAAGTTACCCAAC 1022
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1144 AAACGCAATCATACCCCCACAGGGTGAAATTTTAGGATGTCGACGAAGAAGTTACCCAAG 1203
Query 1023 TCGGTTTGAATTTGGACAATCATCATCATCTTCGGCTCAACGCAGGAGAATTGTGTCAG- 1081
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1204 TCGATTTGAATTTGGACAATCATCATCATCTTCGGCTCAACGAAGGAGAATTGTACCAGC 1263
Query 1082 AAGGCGAAAACCTTGGCTCAACTGGAATCAATCATC------CTGAA-AGAAGG--CACG 1132
||| |||||| ||||||||||| |||||||||| ||||| | |||| |||
Sbjct 1264 AAG-CGAAAATGTTGGCTCAACTTCAATCAATCATGGAAATGCTGAACA-AAGGGGCAC- 1320
Query 1133 TAAATAATATATACAATCCAAGATACGAAAGCCTCGGTTTAT 1174
||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 1321 -AAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTAT 1361
Score = 326 bits (176), Expect = 4e-88
Identities = 274/321 (85%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 7 TCTGGCGATATGTGCGATGACGAATCTTCGCTGTTGAGTCCTTTATGTTTTCTTGAATCA 66
||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 143 TCTGGCGATATGTTCGATGACCAATCGCCGTTGTTGAGTCCTTTATGTTTTCTTGAATCA 202
Query 67 CCGGAACCGTATATTCCGTTATTGGATTGTCTGCCGAATCCGACAGTGGAAACCGAAAAT 126
|||||||||| |||||||||||||||||| ||||||||| | ||||| |||||||||||
Sbjct 203 CCGGAACCGTGTATTCCGTTATTGGATTGCCTGCCGAATTCAACAGTAGAAACCGAAAAA 262
Query 127 TCGTATAACGACCCTTTTGGACTGAT-CCCTATATCTACAAGAGACGAAACTAAC-TGCT 184
||||| |||||||||||| || | ||| | ||||||| ||||||||||||| | ||
Sbjct 263 CCGTATGTTGACCCTTTTGGATTGGTACCCG-TCTCTACAATAGACGAAACTAACCT-CT 320
Query 185 TATTATCCTCTCAACAATCAAATCTAATCACATATCAAGAGACATCAACTCTAGTACCAA 244
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 321 TGTTATCCTCTCAACAATCAAATCTAGTCACATATCAAGAGACATCAACTCTGGTACCAA 380
Query 245 ATCCACTTGAAATGCATca-acaccagcaccaacaac-atctccaacaccagaaccagta 302
| |||||||||||||| || | | ||| |||| ||| | | |||||| || ||||| |
Sbjct 381 AACCACTTGAAATGCACCAGA-ATCAGAACCAG-AACCAGCACCAACATCAAAACCAAAA 438
Query 303 ccagcaccagcaccagcacca 323
|| || || ||||| |||||
Sbjct 439 TCAACATCAACACCAACACCA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5