BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316712
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77990.1 | Symbols: AST56, SULTR2;2 | STAS domain / Sulfate ... 3016 0.0
AT1G77992.1 | Symbols: | other RNA | chr1:29322411-29323358 FO... 505 8e-142
> AT1G77990.1 | Symbols: AST56, SULTR2;2 | STAS domain / Sulfate
transporter family | chr1:29317899-29323352 REVERSE LENGTH=2203
Length=2203
Score = 3016 bits (1633), Expect = 0.0
Identities = 1869/1979 (94%), Gaps = 31/1979 (2%)
Strand=Plus/Plus
Query 1 ATGGGCATAGAGCTTCAGAATCACCAGAGCCACCATGAAGAAGCCGGCCCCACGGAAGAG 60
||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||
Sbjct 161 ATGGGCATAGAGCTTCAGAATCACCAGAGCCACCATGAAGAAGCCAGTCCTGCAGAAGAG 220
Query 61 CCGATATCACGGTGGCTGATAAATACGCCGGAACCACCAAGCATGTGGCAAGAGCTTGTT 120
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 221 CCCATGTCACGGTGGCTGATAAATACGCCGGAACCACCAAGCATGTGGCAAGAGCTTATT 280
Query 121 GGGTACATAAGAACAAATGTGTTGGCCAAGAAGAAACATAGGAGGAACAACACGAAGAAC 180
|||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 281 GGGTACATAAGAACAAATGTCTTGGCCAAGAAGAAACATAAGAGGAACAAGACGAAGAAC 340
Query 181 TCATCATCAAACCCTGTTTACTCTTGTCTTAAATCGGTTTTCCCTATACTTAGTTGGGGA 240
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 341 TCATCATCAAACCTTGTTTACTCTTGTCTTAAATCGGCTTTCCCTATACTTAGTTGGGGA 400
Query 241 AGACAATACAAACTCAACTTCTTCAAGAAAGATTTGATGGCAGGTCTCACTCTCGCTAGT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGACAATACAAACTCAACTTGTTCAAGAAAGATTTGATGGCAGGTCTCACTCTCGCTAGT 460
Query 301 CTTTGCATTCCTCAGAGTATAGGGTATGCGAATTTGGCTGGACTTGATCCAGAGTACGGT 360
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 461 CTTTGCATTCCTCAGAGTATAGGATATGCTAATTTGGCTGGACTTGATCCAGAGTACGGT 520
Query 361 CTATATACAAGTGTGGTACCACCTCTGATATATTCGACGATGGGAACTTCGAGAGAGTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTATATACAAGTGTGGTACCACCTCTGATATATTCGACGATGGGAACTTCGAGAGAGTTA 580
Query 421 GCCATTGGTCCTGTGGCTGTAGTTTCGCTTCTTCTTTCGTCAATGGTTCGTGACATTCAA 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 581 GCCATTGGTCCTGTGGCTGTAGTTTCGCTTCTTCTGTCGTCAATGGTTCGTGACCTTCAA 640
Query 481 GATCCGGTCACCGACCCAATTGCTTACCG-AAAAAT-T-GT--CT-TCAC-----T-G-T 527
||||| ||||||||||||||||||||||| |||| | | | || |||| | | |
Sbjct 641 GATCCAGTCACCGACCCAATTGCTTACCGAAAAATTGTCTTCACTGTCACGTTTTTCGCT 700
Query 528 --CACGTTT------TTCGCTGG---C-GC--GTTAGGGTTTTTGGTGGATTTTTTGTCA 573
| ||||| || ||| | | |||||||||||||||||| |||||||||
Sbjct 701 GGCGCGTTTCAAGCCATCTTTGGACTCTTCAGGTTAGGGTTTTTGGTGGACTTTTTGTCA 760
Query 574 CATGCTGCACTTGTTGGGTTCATGGCTGGTGCTGCCATTGTCATTGGTTTACAACAACTC 633
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 761 CATGCTGCACTTGTTGGGTTCATGGCTGGTGCTGCAATTGTCATTGGTTTACAACAACTT 820
Query 634 AAAGGTTTGTTTGGTTTGTCTCATTTTACCAACAAAACCGATGTGGTTTCGGTTTTATCT 693
|||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 821 AAAGGTTTATTTGGTTTGACTCATTTTACCAATAAAACCGATGTAGTTTCGGTTTTATCT 880
Query 694 TCGGTTTTCCACTCGCTTCACCATCCGTGGCAACCTCTGAACTTTGTCATCGGTAGCTCA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TCGGTTTTCCACTCGCTTCACCATCCGTGGCAACCTCTGAACTTTGTCATCGGTAGCTCA 940
Query 754 TTCCTCATCTTCATCCTCCTAGCTAGATTTATCGGGAAAAGAAACAAAAAATTGTTTTGG 813
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 941 TTCCTCATCTTCATCCTCCTAGCTAGATTTATCGGAAAAAGAAACAATAAGTTGTTTTGG 1000
Query 814 ATTCCGGCGATGGCACCGCTAATATCAGTTGTATTAGCAACACTAATCGTGTATTTAACC 873
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1001 ATTCCAGCGATGGCACCGCTAATATCAGTTGTATTAGCAACACTAATAGTGTATTTATCC 1060
Query 874 AATGCTGAGACTCGAGGGGTTAAGATTGTTAAACACATTAAACCAGGGTTTAACCAACTT 933
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1061 AATGCTGAGTCACGAGGGGTTAAGATTGTTAAACACATTAAACCAGGGTTTAACCAGCTT 1120
Query 934 TCGGTTAACCAATTACAATTCAAAAGCCCACATCTTGGTCAAATTGCCAAAATTGGTCTT 993
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1121 TCAGTTAACCAATTACAATTCAAAAGTCCACATCTTGGTCAAATCGCCAAAATTGGTCTT 1180
Query 994 ATTTCTGCAATCATCGCCCTAACGGAAGCAATTGCGGTGGGAAGATCGTTTGCGACGATC 1053
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1181 ATTTCTGCAATCATCGCCCTAACGGAAGCAATCGCAGTGGGAAGATCGTTTGCGACGATC 1240
Query 1054 AAAGGATATCGTCTCGATGGGAACAAAGAGATGATGGCTATGGGATTTATGAACATCGCT 1113
|||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1241 AAAGGATATCGTTTGGATGGGAACAAAGAGATGATGGCTATGGGATTTATGAATATCGCT 1300
Query 1114 GGCTCTTTATCTTCTTGCTATGTAGCTACCGGGTCCTTCTCAAGAACGGCGGTGAATTTC 1173
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1301 GGTTCTTTATCTTCTTGCTATGTAGCTACCGGGTCTTTCTCAAGAACGGCGGTGAATTTC 1360
Query 1174 AGTGCTGGCTGCGAGACGCTCGTTTCGAACATTGTAATGGCGATTACAGTGATGATATCA 1233
|||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1361 AGTGCTGGTTGCGAGACGGTGGTTTCAAACATTGTAATGGCGATTACAGTGATGATTTCA 1420
Query 1234 CTAGAAGTTTTGACGAGGTTTCTCTACTTCACACCAACGGCGATTCTTGCCTCCATAATC 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 CTAGAAGTTTTGACGAGGTTTCTCTACTTCACACCAACGGCGATTCTTGCCTCCATAATC 1480
Query 1294 CTCTCGGCGCTTCCAGGTCTCATTGATGTCTCTGGTGCTTTACACATTTGGAAACTCGAT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTCTCGGCGCTTCCAGGTCTCATTGATGTCTCTGGTGCTTTACACATTTGGAAACTCGAT 1540
Query 1354 AAACTCGATTTTCTCGTCCTCATTGCCGCCTTCTTCGGCGTTCTCTTTGCCTCCGTCGAG 1413
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1541 AAACTCGATTTTCTCGTCCTCATTGCCGCCTTCTTCGGCGTCCTCTTTGCCTCCGTCGAG 1600
Query 1414 ATCGGTCTTCTTCTTGCCGTGGGGATATCGTTTGCAAGAATAATGTTGAGTTCGATAAGA 1473
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 ATCGGTCTTCTTCTCGCCGTGGGGATATCGTTTGCAAGAATAATGTTGAGTTCGATAAGA 1660
Query 1474 CCAAACATTGAGGCCTTAGGGAGGTTATCAAAAACAGATATCTTCGGTGACATAAATCAG 1533
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 CCAAGCATTGAGGCCTTAGGGAGGTTATCAAAAACAGATATCTTCGGTGACATAAATCAG 1720
Query 1534 TATCCAATGGCTAATAAGACTCCAGGATTATTGACTCTTCGAATCAGTTCTCCTTTGCTA 1593
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1721 TATCCAATGGCAAATAAGACTGCAGGATTATTGACTCTTCGAATCAGTTCTCCTTTGCTA 1780
Query 1594 TGCTTTGCCAATGCCAATTTTATTAGAGACAGAATATTGAATTCAGTTCGAGAAGTAGAA 1653
|||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 1781 TGCTTTGCTAATGCCAATTTTATAAGAGACAGAATATTGAATTCAGTTCAAGAAATAGAA 1840
Query 1654 GAAGAGGAGAATGAACAAGAAGTTAC-AAAAGAAAATGGTCTTCAAGAAGTAATTCTCGA 1712
| |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 1841 GGAGAGGAGAATGAACAAGAAGTT-CTAAAAGAAAATGGTCTTCAAGTAGTAATTCTCGA 1899
Query 1713 CATGTCTTGCGTGATGGGGGTAGATACATCAGGAGTAGTTGCACTTGAAGAACTACATCG 1772
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1900 CATGTCTTGCGTGATGGGCGTAGATACATCAGGAGTATTTGCACTTGAAGAACTACATCA 1959
Query 1773 AGAGCTAGCTTCTAATGACATCCGGTTAGTCATCGCTGGTCCCAGATGGAGGGTACTGCA 1832
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1960 AGAGCTAGCTTCTAATGACATCCGGTTAGTCATCGCTAGTCCCAGATGGAGGGTACTTCA 2019
Query 1833 CAAATTGAAGCGAGCAAAATTGGACGAGAAGTTGAA-ATCAGAAATTATATATATGACAG 1891
|||||||||||||||||||||||||||||| | || | |||||| ||||||||||||||
Sbjct 2020 CAAATTGAAGCGAGCAAAATTGGACGAGAAAATAAAGA-CAGAAAATATATATATGACAG 2078
Query 1892 TAGGAGAAGCCGTAGATATTTACGTAAGAGCAAGATCTACGTCCCACGATTTGTGTTGA 1950
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2079 TAGGAGAAGCCGTAGATATTTATGTAAGAGCAAGATCTACGTCCCACGAGTTGTGTTGA 2137
> AT1G77992.1 | Symbols: | other RNA | chr1:29322411-29323358
FORWARD LENGTH=686
Length=686
Score = 505 bits (273), Expect = 8e-142
Identities = 304/319 (95%), Gaps = 1/319 (0%)
Strand=Plus/Minus
Query 1 ATGGGCATAGAGCTTCAGAATCACCAGAGCCACCATGAAGAAGCCGGCCCCACGGAAGAG 60
||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||
Sbjct 520 ATGGGCATAGAGCTTCAGAATCACCAGAGCCACCATGAAGAAGCCAGTCCTGCAGAAGAG 461
Query 61 CCGATATCACGGTGGCTGATAAATACGCCGGAACCACCAAGCATGTGGCAAGAGCTTGTT 120
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 460 CCCATGTCACGGTGGCTGATAAATACGCCGGAACCACCAAGCATGTGGCAAGAGCTTATT 401
Query 121 GGGTACATAAGAACAAATGTGTTGGCCAAGAAGAAACATAGGAGGAACAACACGAAGAAC 180
|||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 400 GGGTACATAAGAACAAATGTCTTGGCCAAGAAGAAACATAAGAGGAACAAGACGAAGAAC 341
Query 181 TCATCATCAAACCCTGTTTACTCTTGTCTTAAATCGGTTTTCCCTATACTTAGTTGGGGA 240
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 340 TCATCATCAAACCTTGTTTACTCTTGTCTTAAATCGGCTTTCCCTATACTTAGTTGGGGA 281
Query 241 AGACAATACAAACTCAACTTCTTCAAGAAAGATTTGATGGCAGGTCTCACTCTCGCTAGT 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 280 AGACAATACAAACTCAACTTGTTCAAGAAAGATTTGATGGCAGGTCTCACTCTCGCTAGT 221
Query 301 CTTTGCATTCCTCAGAGTA 319
||||||||||||||| |||
Sbjct 220 CTTTGCATTCCTCAG-GTA 203
Score = 294 bits (159), Expect = 2e-78
Identities = 167/171 (98%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 378 ACCACCTCTGATATATTCGACGATGGGAACTTCGAGAGAGTTAGCCATTGGTCCTGTGGC 437
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ACCAACTCTGATATATTCGACGATGGGAACTTCGAGAGAGTTAGCCATTGGTCCTGTGGC 134
Query 438 TGTAGTTTCGCTTCTTCTTTCGTCAATGGTTCGTGACATTCAAGATCCGGTCACCGACCC 497
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 133 TGTAGTTTCGCTTCTTCTGTCGTCAATGGTTCGTGACCTTCAAGATCCAGTCACCGACCC 74
Query 498 AATTGCTTACCGAAAAATTGTCTTCACTGTCACGTTTTTCGCTGGCGCGTT 548
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AATTGCTTACCGAAAAATTGTCTTCACTGTCACGTTTTTCGCTGGCGCGTT 23
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5