BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316714
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78050.1 | Symbols: PGM | phosphoglycerate/bisphosphoglycera... 1509 0.0
AT1G22170.1 | Symbols: | Phosphoglycerate mutase family protei... 850 0.0
> AT1G78050.1 | Symbols: PGM | phosphoglycerate/bisphosphoglycerate
mutase | chr1:29347581-29349755 FORWARD LENGTH=1553
Length=1553
Score = 1509 bits (817), Expect = 0.0
Identities = 933/988 (94%), Gaps = 11/988 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACTACGACGACTATGTCTCATCAAGCGATCGGGTCTATTGTCTCTCATAGACCA 60
||||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 392 ATGGCTACTTCTACGACTATGTCTCATCAAGCGATTGGGTCTGTTGTCTCTCAAAGACCA 451
Query 61 TTTAAAGCTTCTCAGTTTCTGAAGGAGCCTTTG---AATGTTCCAATGAAATTCAGACCA 117
|| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |
Sbjct 452 TTCAAAGCTTCTCAGTTTCTAAAGGAGCCTTTGAATAATGTACCAATGAAATTCAGACAA 511
Query 118 AAAAGATTCAAGATTGAAGCAACTGCGTCTCAGATTTCTCTTGTTGACAACACTTTC--- 174
|||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||
Sbjct 512 AAAAGATTCAAGATTGAAGCAACTGCTTCTCAGATATCTGTCGTTGACAACACTTTCTTG 571
Query 175 T-T--GTCTCCTTCCAAGAACAGACCTCAAGTATCCAAAAAGAAATCAAATGAAGCAGCT 231
| | ||||||||||||||||| ||| || | ||| || |||||||||||||||||||||
Sbjct 572 TCTCCGTCTCCTTCCAAGAACAAACCACATGAATCTAAGAAGAAATCAAATGAAGCAGCT 631
Query 232 TTGATATTGATTAGGCATGGAGAGTCGTTATGGAATGAGAAGAATTTGTTTACGGGTTGT 291
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 632 TTGATATTGATTAGGCATGGAGAATCGTTATGGAATGAGAAGAATTTGTTCACGGGTTGT 691
Query 292 GTTGATGTGCCATTGACTCAGAAAGGTGTGGGAGAAGCTATTGAAGCTGGGAAGAAGATT 351
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 692 GTTGATGTGCCATTGACTCAGAAAGGTGTTGGAGAAGCTATTGAAGCTGGGAAGAAGATT 751
Query 352 AGCAACATACCTGTAGACTTGATCTTCACATCATCTTTAATCCGTGCTCAGATGACCGCA 411
|| ||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 752 AGTAACATTCCTGTAGATTTGATTTTCACTTCTTCTTTAATCCGTGCTCAGATGACTGCA 811
Query 412 ATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAATGAGAGT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 812 ATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAACGAGAGT 871
Query 472 GTAAAGGCGAAAACTTGGAGTCATGTGTTT-AGTGAAGAAACTAGAAAACAATCTATCCC 530
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 872 GTAAAGGCGAAAACTTGGAGTCATGT-TTTCAGCGAAGAAACTAGAAAACAATCTATCCC 930
Query 531 GGTTATAGCGGCTTGGCAGCTGAATGAGAGAATGTATGGAGAATTGCAGGGTTTGAACAA 590
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 931 GGTTATAGCGGCTTGGCAACTGAATGAGAGAATGTATGGAGAGTTGCAGGGTTTGAACAA 990
Query 591 GAAAGAAACAGCGGAAAGATATGGGACACAACAAGTTCACGAATGGCGTAGGAGTTACGA 650
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 991 GAAAGAAACAGCGGAAAGATACGGGACACAACAAGTTCACGAATGGCGCAGGAGTTACGA 1050
Query 651 AATTCCTCCCCCGAAAGGCGAGAGCTTGGAGATGTGCGCTGAGAGAGCAGTGGCTTATTT 710
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1051 AATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATGTGTGCTGAGAGAGCAGTGGCTTATTT 1110
Query 711 TGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGG 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGG 1170
Query 771 GAACTCATTGCGATCTATCATTATGTATCTGGACGATTTAACTTCTCAGGAGGTTACAAC 830
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1171 GAACTCATTGAGATCTATCATTATGTATCTTGACGATTTAACTTCTCAGGAGGTTACAAC 1230
Query 831 TCTAGACTTATCCACGGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAA 890
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TCTAGACCTGTCCACAGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAA 1290
Query 891 ACGAGGAAGCCCGGTCGGTCCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGC 950
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 ACGAGGAAGCCCCGTCGGTTCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGC 1350
Query 951 ACAATACAGAGAGAAGCTTGATGCGGCG 978
||||||||||||||||||||||||||||
Sbjct 1351 ACAATACAGAGAGAAGCTTGATGCGGCG 1378
> AT1G22170.1 | Symbols: | Phosphoglycerate mutase family protein
| chr1:7826289-7828326 FORWARD LENGTH=1392
Length=1392
Score = 850 bits (460), Expect = 0.0
Identities = 732/859 (85%), Gaps = 35/859 (4%)
Strand=Plus/Plus
Query 126 CAAGATTGAAGCAACT-GCGTC-TCAGATTTCTCTTGTTGACAACACTTTCTTGTCTCCT 183
||||||| |||||| | || || |||| || |||| |||||||||| |||||||||||
Sbjct 251 CAAGATTAAAGCAA-TGGCATCATCAG--TT-TCTT-ATGACAACACTCTCTTGTCTCCT 305
Query 184 TCCAAGAAC-AGACCT--CAAGTATC-CAAAAAGAAATCAAATGAAGCAGCTTTGATATT 239
|||||| || | ||| ||| | || | |||||||||||||||||||||||||||||||
Sbjct 306 TCCAAG-ACAATCCCTGACAA-T-TCTC-AAAAGAAATCAAATGAAGCAGCTTTGATATT 361
Query 240 GATTAGGCATGGAGAGTCGTTATGGAATGAGAAGAAT-TTGTTTACGGGTTGTGTTGATG 298
||||||||||||||| || |||||||| ||||||||| || ||||| |||||||||||||
Sbjct 362 GATTAGGCATGGAGAATCTTTATGGAACGAGAAGAATCTT-TTTACTGGTTGTGTTGATG 420
Query 299 TGCCATTGACTCAGAAAGGTGTGGGAGAAGCTATTGAAGCTGGGAAGAAGATTAGCAACA 358
||||||||||| |||||||||| | ||||||||||||||| ||||||| |||||| ||||
Sbjct 421 TGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGATTAGTAACA 480
Query 359 TACCTGTAGAC-TTGATCTTCACATCATCTTTAATCCGTGCTCAGATGACCGCAATGCTT 417
| ||||| || || ||||| ||||| ||||| || |||||||||||||| |||||||||
Sbjct 481 TTCCTGTTGATGTT-ATCTTTACATCTTCTTTGATTCGTGCTCAGATGACTGCAATGCTT 539
Query 418 GCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAATGAGAGTGTAA-A 476
|| |||| ||| || ||||| |||||||| || |||||||||||| |||| || | || |
Sbjct 540 GCTATGATTCAACACCGTCGTAAGAAGGTACCGATCATCTTGCACGATGAAAGCG-AACA 598
Query 477 GGCGAAAACTTGGAGTCATGTGTTTAGTGAAGAAACTAGAAAAC-AATCTATCCCGGTTA 535
|||||||||||||||||| || |||||||| || |||| ||||| |||| || || || |
Sbjct 599 GGCGAAAACTTGGAGTCAAGTTTTTAGTGATGAGACTA-AAAACCAATCCATTCCTGTCA 657
Query 536 TAGCGGCTTGGCAGCTGAATGAGAGAATGTATGGAGAATTGCAGGGT-TTGAACAAGAAA 594
|| | ||||||||||| ||||| ||||||||||||||||| || ||| || |||||| ||
Sbjct 658 TACCTGCTTGGCAGCTCAATGAAAGAATGTATGGAGAATTACAAGGTCTT-AACAAGCAA 716
Query 595 GAAACAGCGGAAAGATATGGGACACAACAAGTTCACGAATGGCGTAGGAGTTACGAAATT 654
|||||||| || |||||||||| | | |||||||||||||||||||||||||| || |||
Sbjct 717 GAAACAGCCGAGAGATATGGGAAAGAGCAAGTTCACGAATGGCGTAGGAGTTATGATATT 776
Query 655 CCTCC-CCCGAAAGGCGAGAGCTTGGAGATGTGCGCTGAGAGAGCAGTGGCTTATTTTGA 713
||||| ||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||| |
Sbjct 777 CCTCCTCCC-AAAGGAGAGAGTTTGGAGATGTGTGCTGAGAGAGCAGTAGCTTATTTTCA 835
Query 714 AGACAATATCAAACCAGA-GCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGGGA 772
||||||||| |||| || ||||||| ||||||| || |||||||| |||||||||||||
Sbjct 836 GGACAATATCGAACC-GAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGGGA 894
Query 773 ACTCATTGCGATCTATCATTATGTATCTGGACGATTTAACTT-CTCAGGAGGTTACAACT 831
|||| |||| ||||||||||||||||| ||| | || |||| | |||||||| | || |
Sbjct 895 ACTCGCTGCGGTCTATCATTATGTATCTTGACAAATTGACTTGC-CAGGAGGTGATAAGT 953
Query 832 CTAGA-CTTATCCACGGGTGTACCA-TTGCTCTACATCTTCAAAGAAGGCAAGTTCATGA 889
||||| || ||| || ||| |||| || |||||||| |||||||||||||| |||||||
Sbjct 954 CTAGAGCT-ATCGACAGGTATACCTCTT-CTCTACATATTCAAAGAAGGCAAATTCATGA 1011
Query 890 AACGAGGAAGCCCGGTCGGTCCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGG 949
| || ||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||
Sbjct 1012 AGCGGGGAAGCCCGGTTGGTCCAACAGAAGCTGGTGTTTATGCTTATACCAAGAGATTGG 1071
Query 950 CACAATACAGAGAGAAGCT 968
| ||||||||| |||||||
Sbjct 1072 CTCAATACAGACAGAAGCT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5