BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316714 Length=999 Score E Sequences producing significant alignments: (Bits) Value AT1G78050.1 | Symbols: PGM | phosphoglycerate/bisphosphoglycera... 1509 0.0 AT1G22170.1 | Symbols: | Phosphoglycerate mutase family protei... 850 0.0 > AT1G78050.1 | Symbols: PGM | phosphoglycerate/bisphosphoglycerate mutase | chr1:29347581-29349755 FORWARD LENGTH=1553 Length=1553 Score = 1509 bits (817), Expect = 0.0 Identities = 933/988 (94%), Gaps = 11/988 (1%) Strand=Plus/Plus Query 1 ATGGCTACTACGACGACTATGTCTCATCAAGCGATCGGGTCTATTGTCTCTCATAGACCA 60 ||||||||| | ||||||||||||||||||||||| |||||| |||||||||| |||||| Sbjct 392 ATGGCTACTTCTACGACTATGTCTCATCAAGCGATTGGGTCTGTTGTCTCTCAAAGACCA 451 Query 61 TTTAAAGCTTCTCAGTTTCTGAAGGAGCCTTTG---AATGTTCCAATGAAATTCAGACCA 117 || ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| | Sbjct 452 TTCAAAGCTTCTCAGTTTCTAAAGGAGCCTTTGAATAATGTACCAATGAAATTCAGACAA 511 Query 118 AAAAGATTCAAGATTGAAGCAACTGCGTCTCAGATTTCTCTTGTTGACAACACTTTC--- 174 |||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||| Sbjct 512 AAAAGATTCAAGATTGAAGCAACTGCTTCTCAGATATCTGTCGTTGACAACACTTTCTTG 571 Query 175 T-T--GTCTCCTTCCAAGAACAGACCTCAAGTATCCAAAAAGAAATCAAATGAAGCAGCT 231 | | ||||||||||||||||| ||| || | ||| || ||||||||||||||||||||| Sbjct 572 TCTCCGTCTCCTTCCAAGAACAAACCACATGAATCTAAGAAGAAATCAAATGAAGCAGCT 631 Query 232 TTGATATTGATTAGGCATGGAGAGTCGTTATGGAATGAGAAGAATTTGTTTACGGGTTGT 291 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 632 TTGATATTGATTAGGCATGGAGAATCGTTATGGAATGAGAAGAATTTGTTCACGGGTTGT 691 Query 292 GTTGATGTGCCATTGACTCAGAAAGGTGTGGGAGAAGCTATTGAAGCTGGGAAGAAGATT 351 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 692 GTTGATGTGCCATTGACTCAGAAAGGTGTTGGAGAAGCTATTGAAGCTGGGAAGAAGATT 751 Query 352 AGCAACATACCTGTAGACTTGATCTTCACATCATCTTTAATCCGTGCTCAGATGACCGCA 411 || ||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| ||| Sbjct 752 AGTAACATTCCTGTAGATTTGATTTTCACTTCTTCTTTAATCCGTGCTCAGATGACTGCA 811 Query 412 ATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAATGAGAGT 471 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 812 ATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAACGAGAGT 871 Query 472 GTAAAGGCGAAAACTTGGAGTCATGTGTTT-AGTGAAGAAACTAGAAAACAATCTATCCC 530 |||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| Sbjct 872 GTAAAGGCGAAAACTTGGAGTCATGT-TTTCAGCGAAGAAACTAGAAAACAATCTATCCC 930 Query 531 GGTTATAGCGGCTTGGCAGCTGAATGAGAGAATGTATGGAGAATTGCAGGGTTTGAACAA 590 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 931 GGTTATAGCGGCTTGGCAACTGAATGAGAGAATGTATGGAGAGTTGCAGGGTTTGAACAA 990 Query 591 GAAAGAAACAGCGGAAAGATATGGGACACAACAAGTTCACGAATGGCGTAGGAGTTACGA 650 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 991 GAAAGAAACAGCGGAAAGATACGGGACACAACAAGTTCACGAATGGCGCAGGAGTTACGA 1050 Query 651 AATTCCTCCCCCGAAAGGCGAGAGCTTGGAGATGTGCGCTGAGAGAGCAGTGGCTTATTT 710 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1051 AATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATGTGTGCTGAGAGAGCAGTGGCTTATTT 1110 Query 711 TGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGG 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 TGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGG 1170 Query 771 GAACTCATTGCGATCTATCATTATGTATCTGGACGATTTAACTTCTCAGGAGGTTACAAC 830 |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1171 GAACTCATTGAGATCTATCATTATGTATCTTGACGATTTAACTTCTCAGGAGGTTACAAC 1230 Query 831 TCTAGACTTATCCACGGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAA 890 ||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 TCTAGACCTGTCCACAGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAA 1290 Query 891 ACGAGGAAGCCCGGTCGGTCCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGC 950 |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1291 ACGAGGAAGCCCCGTCGGTTCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGC 1350 Query 951 ACAATACAGAGAGAAGCTTGATGCGGCG 978 |||||||||||||||||||||||||||| Sbjct 1351 ACAATACAGAGAGAAGCTTGATGCGGCG 1378 > AT1G22170.1 | Symbols: | Phosphoglycerate mutase family protein | chr1:7826289-7828326 FORWARD LENGTH=1392 Length=1392 Score = 850 bits (460), Expect = 0.0 Identities = 732/859 (85%), Gaps = 35/859 (4%) Strand=Plus/Plus Query 126 CAAGATTGAAGCAACT-GCGTC-TCAGATTTCTCTTGTTGACAACACTTTCTTGTCTCCT 183 ||||||| |||||| | || || |||| || |||| |||||||||| ||||||||||| Sbjct 251 CAAGATTAAAGCAA-TGGCATCATCAG--TT-TCTT-ATGACAACACTCTCTTGTCTCCT 305 Query 184 TCCAAGAAC-AGACCT--CAAGTATC-CAAAAAGAAATCAAATGAAGCAGCTTTGATATT 239 |||||| || | ||| ||| | || | ||||||||||||||||||||||||||||||| Sbjct 306 TCCAAG-ACAATCCCTGACAA-T-TCTC-AAAAGAAATCAAATGAAGCAGCTTTGATATT 361 Query 240 GATTAGGCATGGAGAGTCGTTATGGAATGAGAAGAAT-TTGTTTACGGGTTGTGTTGATG 298 ||||||||||||||| || |||||||| ||||||||| || ||||| ||||||||||||| Sbjct 362 GATTAGGCATGGAGAATCTTTATGGAACGAGAAGAATCTT-TTTACTGGTTGTGTTGATG 420 Query 299 TGCCATTGACTCAGAAAGGTGTGGGAGAAGCTATTGAAGCTGGGAAGAAGATTAGCAACA 358 ||||||||||| |||||||||| | ||||||||||||||| ||||||| |||||| |||| Sbjct 421 TGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGATTAGTAACA 480 Query 359 TACCTGTAGAC-TTGATCTTCACATCATCTTTAATCCGTGCTCAGATGACCGCAATGCTT 417 | ||||| || || ||||| ||||| ||||| || |||||||||||||| ||||||||| Sbjct 481 TTCCTGTTGATGTT-ATCTTTACATCTTCTTTGATTCGTGCTCAGATGACTGCAATGCTT 539 Query 418 GCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAATGAGAGTGTAA-A 476 || |||| ||| || ||||| |||||||| || |||||||||||| |||| || | || | Sbjct 540 GCTATGATTCAACACCGTCGTAAGAAGGTACCGATCATCTTGCACGATGAAAGCG-AACA 598 Query 477 GGCGAAAACTTGGAGTCATGTGTTTAGTGAAGAAACTAGAAAAC-AATCTATCCCGGTTA 535 |||||||||||||||||| || |||||||| || |||| ||||| |||| || || || | Sbjct 599 GGCGAAAACTTGGAGTCAAGTTTTTAGTGATGAGACTA-AAAACCAATCCATTCCTGTCA 657 Query 536 TAGCGGCTTGGCAGCTGAATGAGAGAATGTATGGAGAATTGCAGGGT-TTGAACAAGAAA 594 || | ||||||||||| ||||| ||||||||||||||||| || ||| || |||||| || Sbjct 658 TACCTGCTTGGCAGCTCAATGAAAGAATGTATGGAGAATTACAAGGTCTT-AACAAGCAA 716 Query 595 GAAACAGCGGAAAGATATGGGACACAACAAGTTCACGAATGGCGTAGGAGTTACGAAATT 654 |||||||| || |||||||||| | | |||||||||||||||||||||||||| || ||| Sbjct 717 GAAACAGCCGAGAGATATGGGAAAGAGCAAGTTCACGAATGGCGTAGGAGTTATGATATT 776 Query 655 CCTCC-CCCGAAAGGCGAGAGCTTGGAGATGTGCGCTGAGAGAGCAGTGGCTTATTTTGA 713 ||||| ||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||| | Sbjct 777 CCTCCTCCC-AAAGGAGAGAGTTTGGAGATGTGTGCTGAGAGAGCAGTAGCTTATTTTCA 835 Query 714 AGACAATATCAAACCAGA-GCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGGGA 772 ||||||||| |||| || ||||||| ||||||| || |||||||| ||||||||||||| Sbjct 836 GGACAATATCGAACC-GAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGGGA 894 Query 773 ACTCATTGCGATCTATCATTATGTATCTGGACGATTTAACTT-CTCAGGAGGTTACAACT 831 |||| |||| ||||||||||||||||| ||| | || |||| | |||||||| | || | Sbjct 895 ACTCGCTGCGGTCTATCATTATGTATCTTGACAAATTGACTTGC-CAGGAGGTGATAAGT 953 Query 832 CTAGA-CTTATCCACGGGTGTACCA-TTGCTCTACATCTTCAAAGAAGGCAAGTTCATGA 889 ||||| || ||| || ||| |||| || |||||||| |||||||||||||| ||||||| Sbjct 954 CTAGAGCT-ATCGACAGGTATACCTCTT-CTCTACATATTCAAAGAAGGCAAATTCATGA 1011 Query 890 AACGAGGAAGCCCGGTCGGTCCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGG 949 | || ||||||||||| ||||| || ||||||||||| ||||||||||| |||||||||| Sbjct 1012 AGCGGGGAAGCCCGGTTGGTCCAACAGAAGCTGGTGTTTATGCTTATACCAAGAGATTGG 1071 Query 950 CACAATACAGAGAGAAGCT 968 | ||||||||| ||||||| Sbjct 1072 CTCAATACAGACAGAAGCT 1090 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48928059178 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5