BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316721
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78130.1 | Symbols: UNE2 | Major facilitator superfamily pro... 2272 0.0
> AT1G78130.1 | Symbols: UNE2 | Major facilitator superfamily protein
| chr1:29400140-29401902 FORWARD LENGTH=1592
Length=1592
Score = 2272 bits (1230), Expect = 0.0
Identities = 1381/1454 (95%), Gaps = 9/1454 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGCGGAGACGGTGACGTTGATTCTGGTGAATATAGCCGGAATAATGGAAAGAGCC 60
||||||||||||||| ||||| || |||| |||||| |||||||||||||||||||||||
Sbjct 32 ATGAAGGCGGAGACGATGACGCTGCTTCTTGTGAATCTAGCCGGAATAATGGAAAGAGCC 91
Query 61 GACGAATCTCTGCTTCCTGGTGTATACAAAGAGGTCGGTTTAGCTCTCCATACCGATCCA 120
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 92 GATGAATCTCTGCTTCCAGGTGTATACAAAGAGGTCGGTTTAGCTCTTCATACCGATCCA 151
Query 121 ACCGGACTCGGGTCATTAACGTTGCTGCGATCAATGGTTCAAGCCGCTTGCTATCCCTTA 180
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 152 ACCGGACTCGGGTCATTAACGTTGCTACGATCCATGGTTCAAGCCGCTTGCTATCCCTTA 211
Query 181 GCTGCTTACATGGCCATTAGACATAACCGAGCTCACGTTATAGCTCTCGGTGCATTTCTC 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 212 GCTGCTTACATGGCCATTAGACATAACCGAGCTCACGTTATAGCTCTGGGTGCATTTCTC 271
Query 241 TGGTCCGCTGCTACTTTCCTTGTCGCTTTCTCTTCCACTTTCTTCCAGGTAGCTGTGTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 272 TGGTCCGCTGCTACTTTCCTTGTCGCTTTCTCTTCCACTTTCTTCCAGGTAGCAGTGTCT 331
Query 301 AGAGCTCTCAATGGAATTGGTCTTGC-CTTAGTGGCTCCAGCTATTCAATCTCTTGTTGC 359
|||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |||||
Sbjct 332 AGAGCTCTGAATGGAATTGGTCTTGCTCTT-GTGGCTCCAGCTATTCAGTCTCTCGTTGC 390
Query 360 TGATTCAACTGATGATGCTAACCGTGGTACTGCTTTTGGTTGGTTGCAATTAACAGCAAA 419
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 391 TGACTCAACTGATGATGCTAACCGTGGTACTGCTTTTGGATGGTTACAATTAACAGCAAA 450
Query 420 CATCGGTTCGATTTTAGGCGGGCTTTGCTCTGTTTTAATAGCTCCATTTACCTTCATGGG 479
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 451 TATTGGTTCGATTTTAGGCGGGCTTTGCTCTGTTTTAATAGCTCCATTAACCTTTATGGG 510
Query 480 CATACCTGGTTGGAGAGTTGCTTTCCATATCGTAGGTGTGATCAGTGTTATTGTTGGTGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CATACCTGGTTGGAGAGTTGCTTTCCATATCGTAGGTGTGATCAGTGTTATTGTTGGTGT 570
Query 540 GTTAGTCAGAGTTTACGCCAATGACCCACATTTTGTGAAGGATGGTGTTGATGTTTCGAA 599
| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 571 GCTAGTTAGAGTTTTCGCCAATGATCCACATTTTGTGAAGGATGGTGTTGATGTTTCGAA 630
Query 600 TCAACGAGGTTCGAGGAAACCTTTTTGTACAGAGGTGAAGGATTTGGTCCGGGAAGCTGA 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TCAACCAGGTTCGAGGAAACCTTTTTGTACAGAGGTGAAGGATTTGGTCCGGGAAGCTGA 690
Query 660 TACTGTCATAAAGATTCGGTCTTTTCAGATCATTGTAGCTCAGGGAGTGACAGGATCGTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TACTGTCATAAAGATTCGGTCTTTTCAGATCATTGTAGCTCAGGGAGTGACAGGATCGTT 750
Query 720 TCCTTGGTCTGCTCTTTCTTTTGCACCCATGTGGTTGGAACTCATCGGGTTCTCACACGG 779
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 751 TCCTTGGTCTGCTCTTTCTTTTGCACCTATGTGGTTGGAACTCATTGGGTTCTCACACGG 810
Query 780 GAAAACTGCATTCTTGATGGGTCTTTTTGTGGCTGCATCTTCTCTTGGTGGCTTATTTGG 839
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 811 GAAAACTGCATTCTTGATGGGTCTTTTCGTGGCTGCATCTTCTCTTGGTGGCTTGTTTGG 870
Query 840 AGGCAATATGGGAGATTTTCTGTCTACTCGTCTTCCTAATTCCGGAAGAATCATTCTTGC 899
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 871 AGGCAAAATGGGAGATTTTCTGTCTACTCGTCTTCCCAATTCCGGAAGAATCATTCTCGC 930
Query 900 GCAGATCAGTTCAGCCTCAGCGATCCCGCTCGCTGCAATTCTCTTGTTGGTCTTACCAGA 959
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GCAGATTAGTTCAGCCTCAGCGATCCCGCTCGCTGCAATTCTCTTGTTGGTCTTACCAGA 990
Query 960 TGATCCATCCACAGCTGCAATGCATGGTCTCATCTTAGTCCTACTGGGGCT-TTTCGTCT 1018
||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||| || |
Sbjct 991 TGATCCATCTACAGCTGCAATCCATGGTCTGATCTTAGTCCTATTGGGGCTATTT-GTTT 1049
Query 1019 CTTGGAATGCTCCTGCTACCAACAACCCGATCTTTGCAGAGATTGTTCCAGAGAAATCAA 1078
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1050 CTTGGAATGCTCCTGCTACCAACAACCCAATCTTCGCAGAGATCGTTCCAGAGAAATCAA 1109
Query 1079 GAACAAGCGTCTACGCACTGGACAAATCGTTTGAGTCGATCTTGTCATCGTTTGCTCCTC 1138
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1110 GAACAAGCGTCTACGCACTGGACAAATCGTTTGAGTCTATCTTGTCATCGTTTGCACCTC 1169
Query 1139 CTGTAGTTGGAATTCTAGCACAACATGTTTATGGATATAAGCCAATTCCTGAAGGGTCAT 1198
|| |||||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1170 CTATAGTTGGAATCCTGGCACAACATGTTTATGGATACAAGCCAATCCCTGAAGGGTCAT 1229
Query 1199 CTAAATCAGCAGAGATAGCCACAGATAGAGAGAATGCAGCATCTCTGGCAAAAGCTCTTT 1258
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CGAGGTCAACAGAGATAGCCACAGATAGAGAGAATGCAGCATCTCTGGCAAAAGCTCTTT 1289
Query 1259 ATACATCTATAGGAATCCCAATGGCGGCTTGCTGCTTCATCTACTCCTTTCTTTACCGTA 1318
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1290 ATACATCTATAGGACTCCCAATGGCGGCTTGCTGCTTCATATACTCCTTTCTTTACCGTT 1349
Query 1319 CCTATCCTCTAGACAGAGATCGTGCTCGGATGGAGGCTTTTATAGATTCTGAGATGCGTG 1378
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1350 CCTATCCTCTAGACAGAGATCGTGCTCGGATGGAAGCTTTTATAGATTCTGAGATGCGTG 1409
Query 1379 AACTGCTTCCGGAAAGTTCCAA-CAGAGACATTGAGGTTTCACAAGAAGAC-ATT--TTT 1434
|||| ||||| ||||||||||| | ||||||||||| ||||||||||||| | |||
Sbjct 1410 AACTTCTTCCAGAAAGTTCCAATC-GAGACATTGAGTTTTCACAAGAAGAAGACCCCTTT 1468
Query 1435 GCAAACCATGTTAA 1448
||||||||||||||
Sbjct 1469 GCAAACCATGTTAA 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5