BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316726

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78172.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   433    5e-121


> AT1G78172.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29415530-29415921 
FORWARD LENGTH=288
Length=288

 Score =  433 bits (234),  Expect = 5e-121
 Identities = 268/284 (94%), Gaps = 4/284 (1%)
 Strand=Plus/Plus

Query  7    AGCAAAGACGAATTTTCCCGAGATC-GAGCTGCGATTCGCTGCGCCAGAGCTTCGATGCT  65
            |||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||
Sbjct  7    AGCAAAGACGAATTTTCCCGAGATCTCA-CTGCGATTCGCTGCGCCAGAGCTACGATGCT  65

Query  66   TCTCTATTCAC-TGTCATCGTCCCGCACAATCGATACCGCCGGCGAGAAGCAGGAGAAAG  124
            ||||||||||| || |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct  66   TCTCTATTCACTTG-CATCATCTCGCACAATCGATTCCGCCGGCGAGAAGCAGGAGAAAG  124

Query  125  GAGAAACGCGAAGAGAAACAGAGGATCTGAAGAGAAAGCTTACCATGGAGAAGAAAAAGA  184
            |||||||||||||||| | ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct  125  GAGAAACGCGAAGAGAGATAGAGGATCTGAGGAGAAAGCTTACCATGGTGAAGATAAAGA  184

Query  185  TGAATCGGATTAAGCTTTGCGGATTGATGGAACTGCTTCTTCTCGTCGTTTTGGTACTGT  244
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  185  TGAATCGGATTAAGCTTTGCGGATTGATGGAACTGCTTCTTCTCGTCTTTTTGGTACTGT  244

Query  245  TGCTTTCCACTTTCTTCCTCGTCTTCTTCCTTGGATCTACTTGA  288
            ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  245  TGCTTTCCACTTTCTTCCTTGTCTTCTTCCTTGGATCTACTTGA  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5