BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316746
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78440.1 | Symbols: ATGA2OX1, GA2OX1 | Arabidopsis thaliana ... 1458 0.0
> AT1G78440.1 | Symbols: ATGA2OX1, GA2OX1 | Arabidopsis thaliana
gibberellin 2-oxidase 1 | chr1:29511599-29513051 REVERSE LENGTH=1224
Length=1224
Score = 1458 bits (789), Expect = 0.0
Identities = 917/980 (94%), Gaps = 4/980 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTCTTGTCTAAACCGGTCGCAGTACCAAAATCCGGGTTCTCTCCAATCCCGGTT 60
|||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct 62 ATGGCGGTATTGTCTAAACCGGTAGCAATACCAAAATCCGGGTTCTCTCTAATCCCGGTT 121
Query 61 ATAGATATGTCTGACCCAGAATCCAAGCATGCCCTCGTCAAAGCCTGCGAAGACTTCGGC 120
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 122 ATAGATATGTCTGACCCAGAATCCAAACATGCCCTCGTGAAAGCATGCGAAGACTTCGGC 181
Query 121 TTCTTCAAGGTGATCAACCATGGCGTTTCCGCAGAGCTAGTCTCTGTTTTAGAACACGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTCTTCAAGGTGATCAACCATGGCGTTTCCGCAGAGCTAGTCTCTGTTTTAGAACACGAG 241
Query 181 ACCGTCGAGTTCTTCTCGTTGCCCAAGTCAGAGAAAACCCTAGTCGCAGGTTATCCCTTT 240
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 242 ACCGTCGATTTCTTCTCGTTGCCCAAGTCAGAGAAAACCCAAGTCGCAGGTTATCCCTTC 301
Query 241 GGATACGGGAACAGTAAGATTGGTCGGAATGGTGACGTGGGTTGGGTTGAGTACTTGTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GGATACGGGAACAGTAAGATTGGTCGGAATGGTGACGTGGGTTGGGTTGAGTACTTGTTG 361
Query 301 ATGAATGCTAATCTTGATTCCGGTTCGGGTCCACTATTTCCGAGTCTTCTCAAAAGCCCG 360
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 ATGAACGCTAATCATGATTCCGGTTCGGGTCCACTATTTCCAAGTCTTCTCAAAAGCCCG 421
Query 361 GGAACTTTCAGAAACGCATTGGAAGAGTACACAACATCAGTGAGAAAAATGACATGCGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 422 GGAACTTTCAGAAACGCATTGGAAGAGTACACAACATCAGTGAGAAAAATGACATTCGAT 481
Query 421 GTTTTGGAGATGATCACAGATGGGCTAGGGATCAAACCGATGAACACAATAAGCAAGCTT 480
|||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 482 GTTTTGGAGAAGATCACAGATGGGCTAGGGATCAAACCGAGGAACACACTTAGCAAGCTT 541
Query 481 GTGTCTGACCAAAACACTGATTCGATATTGAGACTTAACCACTATCCACCATGTCCTCTT 540
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 542 GTGTCTGACCAAAACACGGACTCGATATTGAGACTTAATCACTATCCACCATGTCCTCTT 601
Query 541 ATCGACAAGAAGACCAACGGTGGGGAA-AATGTGATTGGTTTTGGCGAACACACAGATCC 599
| | | ||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 602 AGCAATAAGAAAACCAATGGTGGT-AAGAATGTGATTGGTTTTGGTGAACACACAGATCC 660
Query 600 TCAAATCATCTCTGTCTTGAGATCTAACAACACTTCTGGTCTCCAAATCAATATAACTGA 659
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 661 TCAAATCATCTCTGTCTTAAGATCTAACAACACTTCTGGTCTCCAAATTAATCTAAATGA 720
Query 660 CGGCTCTTGGGTCGCTGTCCCTCCCGATCACTCTTCCTTCTTCTTCAACGTTGGTGACTC 719
||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 TGGCTCATGGATCTCTGTCCCTCCCGATCACACTTCCTTCTTCTTCAACGTTGGTGACTC 780
Query 720 TCTTCAGGTGATGACAAATGGGAGGTTCAGGAGCGTGAGGCATAGGGTTTTAGCGAACGG 779
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 781 TCTCCAGGTGATGACAAATGGGAGGTTCAAGAGCGTGAGGCATAGGGTTTTAGCTAACTG 840
Query 780 TGGCAAATCTAGGGTTTCTATGATTTACTTCGCTGGACCTTCGTTGACTCAGAGAATCGC 839
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 TAAAAAATCTAGGGTTTCTATGATTTACTTCGCTGGACCTTCATTGACTCAGAGAATCGC 900
Query 840 TCCGTTGACTTGTCTT-ATGGACAACGAAGACGAGATGTTGTACGAAGAGTTCACTTGGT 898
||||||||| ||| || || ||||| || ||||||| ||||||||| ||||| |||||||
Sbjct 901 TCCGTTGACATGT-TTGATAGACAATGAGGACGAGAGGTTGTACGAGGAGTTTACTTGGT 959
Query 899 CTGAGTACAGAAACTCTGCCTACAACTCTAGATTGTCTGATAATAGGCTTCAACAATTCG 958
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTGAATACAAAAACTCTACCTACAACTCTAGATTGTCTGATAATAGGCTTCAACAATTCG 1019
Query 959 AGAGAAAGACTACAAATAAT 978
| || ||||||| ||| |||
Sbjct 1020 AAAGGAAGACTATAAAAAAT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5