BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316750

Length=1326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44970.1 | Symbols:  | Cytochrome P450 superfamily protein |...   235    8e-61


> AT3G44970.1 | Symbols:  | Cytochrome P450 superfamily protein 
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440

 Score =  235 bits (127),  Expect = 8e-61
 Identities = 321/411 (78%), Gaps = 28/411 (7%)
 Strand=Plus/Plus

Query  28   TTG-GTCATAGCTTTAGTGGTTGTGAGCATCAGCCACTGGTTGTACCGATGGTCGAACAC  86
            ||| || |||| ||||||||||| |||  |  | || |||| ||||| |||||| || ||
Sbjct  27   TTGTGTTATAGTTTTAGTGGTTGCGAGGGTTGGTCATTGGTGGTACCAATGGTC-AA-AC  84

Query  87   TAAACCTAAGTGC-ATCGGCAAGTTACCTCCAGGATCAATGGGTTTCCCGATCATCGGAG  145
                ||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  85   ----CCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCATCGGAG  139

Query  146  AAACAATCCATTTCTTTAAGCCTTATGGATTCTACGAGAT-TCCACCCTTTCTCAAGAAG  204
            | ||| |  ||||||||||||||||||||||||||||||| ||| || | ||||||||| 
Sbjct  140  AGACATTAGATTTCTTTAAGCCTTATGGATTCTACGAGATCTCC-CCATATCTCAAGAAA  198

Query  205  A-GATTATTAAGGTATGGGCCGTTGTTTCGTACGAACATTTTTGGT-TCCAAAACTGTGT  262
            | |||  |||||||||||||| || ||||| || |||||| ||||  |  ||||| ||| 
Sbjct  199  AAGATG-TTAAGGTATGGGCCATTATTTCGGACAAACATTCTTGGAGTA-AAAACCGTGG  256

Query  263  TTTCGACGGA-ACCAG-ATGTTATCTTCGAGATTTTCCGGCAAGAGAACAAGTCTTTCGC  320
            | |||||||| |  || |||||| | | ||||||||  | ||||||||||||||||||  
Sbjct  257  TATCGACGGATA--AGGATGTTAACATGGAGATTTTAAGACAAGAGAACAAGTCTTTCAT  314

Query  321  GCTTG-GCTATCCAGACATG-TTTG-TCAAGGTACTTGG-AAAAGATAATTTGTTCTTCA  376
              ||  | ||||| ||  || |||  | |||  | |||| ||||||||  |||||||| |
Sbjct  315  T-TTAAGTTATCCGGA--TGGTTTAATGAAGCCA-TTGGGAAAAGATAGCTTGTTCTTGA  370

Query  377  AGCCCGGGGACATACATAAGCACCTCaaaaaaaTTACTCAACATCTTCTTG  427
            ||   ||  |||| || |||||| ||||| |||| ||||  |||||| |||
Sbjct  371  AGATTGGAAACATCCACAAGCACATCAAACAAATAACTCTTCATCTT-TTG  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65260708500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5