BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316754 Length=399 Score E Sequences producing significant alignments: (Bits) Value AT1G78520.1 | Symbols: | Carbohydrate-binding X8 domain superf... 492 1e-138 > AT1G78520.1 | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:29537976-29538656 REVERSE LENGTH=348 Length=348 Score = 492 bits (266), Expect = 1e-138 Identities = 305/324 (94%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 1 ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCATCCTCTACCTTTTCTCAG-ACAA 59 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 1 ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCTTCCTCTACCTTGTCTCAGAAC-G 59 Query 60 AAACTTCATCAACGTCAACGCAGAGACTAAGACTTGGTGTGTGGCCAAACCTTCTTCGGA 119 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 60 AAACTTCATCAACGTCAACGCAGAGACCAAGACTTGGTGTGTGGCTAAACCTTCTTCCGA 119 Query 120 TCAAGCAACACTTCTAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCT 179 ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TCAAGTAGCACTTCAAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCT 179 Query 180 TTCGAGTGGATGTCCATGTTATTCCCCTGGTAACCTCATCAACCATGCTTCTATCGCCAT 239 || |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| Sbjct 180 TTTGAGTGGATGTCCATGTTACTCCCCTAGTAACCTCATCAACCATGCATCTATCGCCAT 239 Query 240 GAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAAAACTCTGG 299 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 240 GAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAGAACTCCGG 299 Query 300 ACTCATTGTCATAACTAATCCGAG 323 ||||||| ||||||||||||||| Sbjct 300 ACTCATTACCATAACTAATCCGAG 323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18850405875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5