BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316754

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78520.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   492    1e-138


> AT1G78520.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr1:29537976-29538656 REVERSE LENGTH=348
Length=348

 Score =  492 bits (266),  Expect = 1e-138
 Identities = 305/324 (94%), Gaps = 2/324 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCATCCTCTACCTTTTCTCAG-ACAA  59
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||  
Sbjct  1    ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCTTCCTCTACCTTGTCTCAGAAC-G  59

Query  60   AAACTTCATCAACGTCAACGCAGAGACTAAGACTTGGTGTGTGGCCAAACCTTCTTCGGA  119
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct  60   AAACTTCATCAACGTCAACGCAGAGACCAAGACTTGGTGTGTGGCTAAACCTTCTTCCGA  119

Query  120  TCAAGCAACACTTCTAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCT  179
            ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TCAAGTAGCACTTCAAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCT  179

Query  180  TTCGAGTGGATGTCCATGTTATTCCCCTGGTAACCTCATCAACCATGCTTCTATCGCCAT  239
            || |||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct  180  TTTGAGTGGATGTCCATGTTACTCCCCTAGTAACCTCATCAACCATGCATCTATCGCCAT  239

Query  240  GAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAAAACTCTGG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  240  GAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAGAACTCCGG  299

Query  300  ACTCATTGTCATAACTAATCCGAG  323
            |||||||  |||||||||||||||
Sbjct  300  ACTCATTACCATAACTAATCCGAG  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5