BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316771
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78710.1 | Symbols: TBL42 | TRICHOME BIREFRINGENCE-LIKE 42 |... 1624 0.0
> AT1G78710.1 | Symbols: TBL42 | TRICHOME BIREFRINGENCE-LIKE 42
| chr1:29602708-29604557 FORWARD LENGTH=1080
Length=1080
Score = 1624 bits (879), Expect = 0.0
Identities = 1014/1081 (94%), Gaps = 2/1081 (0%)
Strand=Plus/Plus
Query 1 ATGAATTTCCATCAGGTCCTCTTTCTCATTCTTCTTATTTTTCTTGTTGATTTATCAGAT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTTCCATCAGGTCCTCTTTCTCCTTCTTCTTATTTTTCTTGTTGATTTATCAGAT 60
Query 61 TACAATGTCTTAGCAGATAACACCGATGCTGGTTACAAGAACACGTCAAAGTGTAACATT 120
|| ||||||||||||||| ||| ||| ||||||||||||| | ||||||||||||||
Sbjct 61 TATGGTGTCTTAGCAGATAAGACCAATGATGGTTACAAGAACGCAACAAAGTGTAACATT 120
Query 121 TACCAAGGACGTTGGATTTATGACAATTCTTCTAATCCTCTTTATGGAACATCGACTTGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TACCAAGGACGTTGGATTTATGACAATTCTTCTAATCCTCTTTATGGAACATCAACTTGT 180
Query 181 CCATTCATCGGATTGGATTGCCAGAAGTTTGGTCGGCCGGACAAGAACTACCTCCATTAC 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CCGTTCATTGGATTGGATTGCCAGAAGTTTGGTCGGCCGGACAAGAACTACCTTCATTAC 240
Query 241 CGATGGCAACCCACCGGATGCGACATCCCAAGATTCGACGGACGAGATTTCTTGAA-GAG 299
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| || ||
Sbjct 241 CGATGGCAACCCACCGGATGTGACATCCCAAGATTCAACGGACGAGATTTCTT-AACAAG 299
Query 300 ATTCAAAGGGaaaaaaaTACTGTTTGTGGGAGATTCACTAAGCAATAATATGTGGGTGTC 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 ATTCAAAGGGAAAAAAATACTGTTTGTGGGAGATTCACTAAGCAACAATATGTGGGTGTC 359
Query 360 TCTAAGTTGCATGCTTCACGCTGCCGTTCCTAACGCTAAGTACACCTTCCAACTCAACAA 419
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 360 ACTAAGTTGCATGCTTCACGCGGCCGTTCCTAACGCTAAGTATACCTTCCAACTCAACAA 419
Query 420 ACGCCTCTCTACTTTCACCATTCCGGAATATGGAATATCAGTAAATTTCCTGAAAAATGG 479
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 GGGCCTCTCAACTTTCACCATTCCAGAATATGGAATATCTGTAAATTTCCTGAAAAATGG 479
Query 480 GTTCCTGGTGGATTTAGTAGCGGACAAAACAAGAGGGTTGATTCTGAAACTAGATTCGAT 539
||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 480 GTTCCTGGTGGATTTGGTATCGGACAAAACAAGAGGATTGATTCTGAAATTAGATTCGAT 539
Query 540 CAGTTCCGGAAATCAATGGTTGGGATCAGATGTTGCCATCTTTAACACATTCCACTGGTG 599
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 540 CAGTAGGGGAAATCAATGGTTGGGATCTGATGTCGCCATCTTTAACACATTCCACTGGTG 599
Query 600 GTCTCACACCGGTCGTGCCAAAACATGGGATTATTTTCAAACGGGAGACCAAATAGTGAA 659
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GTCTCACACTGGCCGTGCCAAAACATGGGATTATTTTCAAACGGGAGATAAAATAGTGAA 659
Query 660 AGAGATGAATAGAATGGAAGCTTTCAAGATTGCTTTAACAACTTGGGCTAAGTGGATTGA 719
|||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 660 AGAGATGAATAGAATGGAGGCTTTCAAGATTGCTTTGACAACTTGGTCTAAATGGATTGA 719
Query 720 TCACAACATTGATCCTTCAAAAACTAGGGTTTTCTATCAAGGCGTTTCTCCCGTTCACTT 779
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TCACAATATCGATCCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTT 779
Query 780 AATTGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGCGAGACGGAACCAGTGAA 839
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 780 AAATGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGTGAGACGGTACCAGTGCA 839
Query 840 AGGACCAAGTTACTGCGGACAACCTAATGAAGGTGAAGCTATAGTGAGAAGTGTGATCGG 899
||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 840 AGGACCAAGTTACCCCGGACGACCTAATGAAGGTGAAGCTATAGTGAAAAGTGTGATCGG 899
Query 900 AGGGATGGCTAAACCGGTGGAGCTCCTTGATGTGACGAATATGACGGAGATGAGGAAGGA 959
| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 AAGGATGGCTAAACCAGTGGAGCTCCTTGATGTGACGGCTATGACGGAGATGAGGAAGGA 959
Query 960 CGGTCACCCTTCGATCTATGCCGGTGGAGGAAATCGCTTAAACGACTGCAGCCATTGGTG 1019
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 CGGTCACCCTTCCATCTATGCCGGTGGAGGCGATCGCTTAAACGACTGCAGCCATTGGTG 1019
Query 1020 CCTCCCTGGAGTCCCAGACGCTTGGAACCAGCTCCTTTATACGGCTCTTGTCCGCCACTA 1079
|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 1020 CCTCCCTGGAGTCCCAGACGCTTGGAACCAGCTCCTTTATACAGCTCTTCTCAGCCACTA 1079
Query 1080 G 1080
|
Sbjct 1080 G 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5