BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316772
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding pro... 1546 0.0
AT3G09360.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein ... 987 0.0
AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein ... 846 0.0
AT1G30455.1 | Symbols: | transcription regulators;translation ... 161 2e-38
AT1G42650.1 | Symbols: | transposable element gene | chr1:1602... 156 8e-37
> AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding protein
| chr2:145676-149394 FORWARD LENGTH=2257
Length=2257
Score = 1546 bits (837), Expect = 0.0
Identities = 1174/1325 (89%), Gaps = 70/1325 (5%)
Strand=Plus/Plus
Query 424 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAACTCTGTGAAATG 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
Query 484 CTGTACCTTGTGCAAAACGAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 543
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTGTACCTTGTGCAAAACAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 489
Query 544 CGATTCATGAACAACTTATTGAAAGGTGCACACAATATAA-CAAAAAATGTCTGGGATAA 602
||||||| |||| ||||||||||||||||||| || || ||||| ||||| | | ||
Sbjct 490 CGATTCACAAACAGCTTATTGAAAGGTGCACACGCTA-AAGCAAAAGATGTC--GCA-AA 545
Query 603 GGTCTTTGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTGGATGCAGACCGG 662
| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 546 ---C------ACGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGG 596
Query 663 CCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACTTTCTCATGGTAT 722
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 CCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTAT 656
Query 723 CATGTGCTCTAGAGCAGATATTGCAAAAATTGTGCATATGTGTGAAGCAACAATAACCAA 782
||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 CATGTACTCTAGGGCAGACATTGCAAAAGTTGTGCATATGTGTGAAGCAACAATAACCAA 716
Query 783 AAGATTGAATGAGTTTGCTAATACCAAGGCTGGAAGTTTAACTGTTGATGAGCTTGATAA 842
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 717 AAGATTGAATGAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGATGA 776
Query 843 AAGCGAACCGATATCGCGTAAAGAAGCTTTTACCCCAAGACCAAATTCTGACGAAGGAGT 902
||||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 777 AAGCGAAGAGATATTGCGTAAAGAAACTTTTACCCCAAGACCAAATTCTGACAAAGGAGT 836
Query 903 AGTGAACTGTCAACATAAGGATTTAAAACGTTTTGGTTATGGATTATGTAAGAGCTGTCA 962
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 AGTGAACTGTAAACATAAGGATTTAAAACGCTTTGGTTATGGATTATGTAAGAGCTGTCA 896
Query 963 CGATGATTTCATTAAAATTTCTGGTGGAATTGTTGGTGGGTCGGATCCTCCTGCTT-TCC 1021
||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 897 CGACGATTTCATTATAATTTCTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTTAT-C 955
Query 1022 AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAATGAGGGAGGAATTG 1081
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATTG 1015
Query 1082 GTAGC---------GATGAACAAGTAAATGTAAGCAAAGGGG-AAAAACAATGTCCGGAG 1131
||| | ||||||||||| |||||||||||| ||| ||||| ||||| |||||
Sbjct 1016 GTAACTTAAACCACGATGAACAAGTTAATGTAAGCAAAAGGGCAAAAA-AATGTTCGGAG 1074
Query 1132 AAAGGCCAAGGAGAAAAATATGGGGGTGAA-GAACATGCTGAATATTCGGACGACGATGA 1190
|||||| ||||||||| ||||||||||||| || ||||||||||||||||| |||
Sbjct 1075 AAAGGCGAAGGAGAAACATATGGGGGTGAAAGA-CATGCTGAATATTCGGA------TGA 1127
Query 1191 ATCAGGCATCTGTTCGGACGACGATGATTCTGAGGTGGATCACATTCTTCTCGGTGAGGA 1250
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1128 ATCAGACATCTGTTCGGACGACGATGATTCTGAGGTGGAACATGTTCTTCTCGGTGAGGA 1187
Query 1251 CGAAACGCTGTTGAAGACGACGGCCTGGAATTTGCAAAACAGAGAGTATGTTAAGGAGCA 1310
|||||||| ||||||||| |||||||||||||| ||||||| ||| ||| || |||||||
Sbjct 1188 CGAAACGCGGTTGAAGACAACGGCCTGGAATTTACAAAACAAAGACTATCTTGAGGAGCA 1247
Query 1311 AGCAGAAAAAGAAGCAGCTCTGAAGGCAGCTAATTGCCCAGAAGATGCAAGAAACCTTGT 1370
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1248 AGCAGAAAAGGAAGCAGCTCTGAAGGCTGCTAATTGCCCCGAAGATGCAAGAAACCTTGT 1307
Query 1371 GGAAGCTTCTAAAGCAGCTGTGGCGAAATCTAGAAAGGAAAAGCGACAAAAACGTGCTGA 1430
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1308 GGAAGCTTCTAAAGCAGCTGTGGCGAATTCTAGAAAGGAAAAGCGACGAAAACGTGCTGA 1367
Query 1431 AGAAGAAAAGAACGCACCTCC-TCCAGCTACAACCATGGAAGCTGTTCGCAGAACACTTG 1489
|||| ||||| |||||||| || ||||||| ||| |||||| | | ||
Sbjct 1368 GGAAGCTAAGAATGCACCTCCATC-AGCTACAGCCACGGAAGCA-T-C---------TT- 1414
Query 1490 AGAGGAAGAGACTCGGTGGGTTAATAAACTACGATGTTTTGGAGGAGCTCTTTGATACTA 1549
| | | ||||||| | |||||||| ||| || |||||||||| |||||||| |||||||
Sbjct 1415 ATAC-A-GAGACTCAGCGGGTTAATCAAC-ACCATGTTTTGGACGAGCTCTTGGATACTA 1471
Query 1550 GCCCAGGTAAGAAGTCACAGAAGAAACCGAGAACCGAGACAGTTACAGAGAAGGAGAAGG 1609
||||| | |||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 1472 GCCCA---A------CACAGAAGAAACCGAGAACCGAGACAGTAACGGAGAAGAAGAAGG 1522
Query 1610 AAGAGCATGAGATTGATGAAGATGAAGAAGC--ACCA----TACG-AG-ATGA-ACACAG 1660
||||||||||||||| |||||||||||||| | | |||| || | | || |||
Sbjct 1523 AAGAGCATGAGATTGTTGAAGATGAAGAAGATGAAGAAGACTACGCAGCACCACACGCAG 1582
Query 1661 ATGAGAAATTCTATGAAGACGAAGTGGAAGAAGAAGAGGATGGTTATGATTTTGGATTGT 1720
||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1583 ATGAGAACTTCTATGAAGACGAAGTGGAAGAGGAAGAGAATGGTTATGATTTTGGATTGT 1642
Query 1721 ATTAA 1725
|||||
Sbjct 1643 ATTAA 1647
Score = 477 bits (258), Expect = 1e-133
Identities = 347/387 (90%), Gaps = 17/387 (4%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCTTCGACGGTGGT 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCAAAATTCGCCCCTTCGACGGTGGT 60
Query 61 TTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTACC 120
Query 121 TTCGTTAAGAATGCCGCTGGACAGAGCCAAGCGTCAGGTAACATTGTGACGAGTGTTCAG 180
|||||||||||||||||| | || | || || | |||| || |||||||||| |
Sbjct 121 TTCGTTAAGAATGCCGCT-G---GA--C-AG-GT-ATGTAATATAGTGACGAGTG-T--- 167
Query 181 AGTGGGCTTTCAAGCTCACGTGAAAGGAGAAAGAGAATAGCTAGAGATGAGTTAAGGAAT 240
|||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||
Sbjct 168 --TGGGAATTCAAGCTCACGTGATAGGAGAAGGAGAAAAGCTATAGATGAGTTAAGGAAT 225
Query 241 TTGAAAGATGCCTTGGGAATTGGTGATGAGAGAGATGATGTGATTGTCATGGCTGCCGAA 300
|||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |
Sbjct 226 TTGAAAGATGCCTTAGGAATCGGTGATGAGAGAGATGATGTGGTTGACATGGCTGCCGTA 285
Query 301 TTCTTTGAAATGGCAACTG-ACCAAAACTTCACTAAAGGGCGCAGAACTGAACTTGTACA 359
|||| |||| ||||| || ||||||||||||| |||||||||||| |||||||||||||
Sbjct 286 TTCTATGAAGCGGCAA-TGGACCAAAACTTCACCAAAGGGCGCAGAGCTGAACTTGTACA 344
Query 360 GTCTTCCTGTCTCTACTTGACTTGCAG 386
||||||||||||||| ||| |||||||
Sbjct 345 GTCTTCCTGTCTCTATTTGGCTTGCAG 371
> AT3G09360.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein
| chr3:2873449-2878591 FORWARD LENGTH=2188
Length=2188
Score = 987 bits (534), Expect = 0.0
Identities = 921/1101 (84%), Gaps = 54/1101 (5%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCTT-CGACGGTGG 59
||||| |||||||| ||||| | |||||||||||||||||| || ||||| || ||||
Sbjct 215 ATGGTATGGTGTAACCATTGCGTGAAGAATGTTCCCGGAATACG-CCCTTATGATGGTGC 273
Query 60 TTTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTAC 119
||||||||| |||||||||||||||| ||||| || ||| |||||||||| || |||||
Sbjct 274 ATTGGCATGTAATTTATGTGGGAGGATATTGGAGAATTTCCATTTTTCTACCGAAGTTAC 333
Query 120 CTTCGTTAAGAATGCCGCTGGACAGAGCCAAGCGTCAGGTAACATTGTGACGAGTGTTCA 179
|||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 334 ATTCGTTAAGAATGCTGCTGGACAGAGCCAAGCATCAGGTAACATAGTGAGGAGTGTTCA 393
Query 180 GAGTGGGCTTTCAAGCTCACGTGAAAGGAGAAAGAGAATAGCTAGAGATGAG-TTAAGGA 238
|||||| || |||||||||||||||||||| |||||||||||||||||| || | ||
Sbjct 394 AAGTGGGATTACAAGCTCACGTGAAAGGAGATTTAGAATAGCTAGAGATGAGCTT-ATGA 452
Query 239 ATTTGAAAGATGCCTTGGGAATTGGTGATGAGAGAGATGATGTGATTGTCATGGCTGCCG 298
||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 453 ATTTGAAAGATGCATTGGGGATTGGTGATGAGAGAGATGATGTGATTGTCATCGCAGCTA 512
Query 299 AATTCTTTGAAATGGCAACTGACCAAAACTTCACTAAAGGGCGCAGAACTGAACTTGTAC 358
||||||||||||||||| ||| || || ||||| ||||| |||||||||||||| ||||
Sbjct 513 AATTCTTTGAAATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTAC 572
Query 359 AGTCTTCCTGTCTCTACTTGACTTGCAGGGAAAAGAAAATTCCGTTTCTTCTTATTGATT 418
|| ||||||| ||||||||||| ||||||||| ||| ||| |||| |||||||||||||
Sbjct 573 AGGCTTCCTGCCTCTACTTGACGTGCAGGGAATTGAACATTGCGTTGCTTCTTATTGATT 632
Query 419 TTTCAAGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAACTCTGTG 478
| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 633 TCTCAAGCTACCTTCGAGTTAGCGTTTATGAGTTAGGTTCTGTATACTTACAACTCTGTG 692
Query 479 AAATGCTGTACCTTGTGCAAAA-CGAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTC 537
||||||||||||||||| |||| || ||| ||||| ||||||||||||||||||| |||
Sbjct 693 AAATGCTGTACCTTGTGGAAAATCG-GAATTATGAAAAGCTTGTTGATCCTTCAATTTTC 751
Query 538 ATTCCTCGATTCATGAA-CAACTTATTGAAAGGTGCACACAATATAACAAAAAATGTCTG 596
|| ||||||| | || || |||||||||||| | | || |||| ||| | ||| ||
Sbjct 752 ATGGATCGATTC-TCAAACAGCTTATTGAAAGGA--A-A-AA-ATAATAAAGA-TGT-TG 803
Query 597 GGATAAGGTCTTTGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTGGATGCA 656
| || | || |||| | |||||||| |||||||||||||||||||||| ||
Sbjct 804 ---T--GG-CA-----ACAGCTAGAGACATTATAGCTAGTATGAAGAGAGATTGGATACA 852
Query 657 GACCGGCCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACTTTCTCA 716
|||||||||||| || ||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 853 GACCGGCCGGAAGCCTAGTGGAATATGTGGAGCAGCACTTTACACAGCTGCTCTTTCTCA 912
Query 717 TGGTATCATGTGCTCTA-GAGCAGATATTGCAAAAATTGTGCATATGTGTGAAGCAACAA 775
|||||||| |||||||| || ||||||||| ||| ||||||||||| |||||||||||
Sbjct 913 TGGTATCAAGTGCTCTAAGA-CAGATATTGTAAACATTGTGCATATATGTGAAGCAACTC 971
Query 776 TAACCAAAAGATTGAATGAGTTTG-CTAATACCAAGGCTGGAAGTTTAACTGTTGATGAG 834
| |||||| |||||| |||||||| | | ||| | |||||| ||||| |||| |||||
Sbjct 972 TCACCAAACGATTGATTGAGTTTGGCGA-TACGGATTCTGGAAATTTAAATGTTAATGAG 1030
Query 835 CTT-GATAAAAGCGAACCGATATCGCGTAAA-GAAGCTTTTACCCC-AAGACCAAATTCT 891
|| || ||| | | || ||||| |||| || |||||||| || ||||| ||
Sbjct 1031 CTCAGAGAAA-G--A---GA-ATCGCATAAAAGAT-CTTTTACCATGAA-ACCAACCTCA 1081
Query 892 GACGAAGGAGTAG-TGAACTGTCAA-CATAAGGATT-TAAAACGTTTTGGTTATGGATTA 948
| ||| || | || |||| | ||| ||||| |||| | ||||||||||||| ||
Sbjct 1082 AATAAAG-AGGCGGTGCTCTGT-ATGCATCAGGATAGTAAACC-TTTTGGTTATGGACTA 1138
Query 949 TGT-AAGAGCTG-TCACGATGATTTCATTAAAA-TTTCTGGTGGAATTGTTGGTGGGTCG 1005
||| |||| ||| | || | |||||||| ||| ||||||||||| |||||||||||||
Sbjct 1139 TGTGAAGA-CTGCT-ACAAAGATTTCAT-AAATGTTTCTGGTGGACTTGTTGGTGGGTCC 1195
Query 1006 GATCCTCCTGCTTTCCAGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAA 1065
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 AATCCTCCTGCTTTCCAGCGCGCAGAGAAAGAGCGAATGGAAAAAGCAGCTAGAGAAGAA 1255
Query 1066 AATGAGGGAGGAATTGGTAGC 1086
|| |||||||||||| |||||
Sbjct 1256 AACGAGGGAGGAATTAGTAGC 1276
> AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein
| chr2:18595348-18598438 REVERSE LENGTH=1820
Length=1820
Score = 846 bits (458), Expect = 0.0
Identities = 896/1098 (82%), Gaps = 68/1098 (6%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCT-TCGACGGTGG 59
|||||||||||||| ||||||| |||||| ||||||||||| ||||||| | || | ||
Sbjct 147 ATGGTGTGGTGTAAACATTGTGGGAAGAACGTTCCCGGAATACGCCCCTAT-GATGCTGC 205
Query 60 TTTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTAC 119
||| |||||||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 206 ATTGTCATGTGATTTATGTGGCAGGATTTTGGAGAATTTCAATTTTTCTACTGAAGTTAC 265
Query 120 CTTCGTTAAGAATGCCGCTGGACAGAGCCAAGCGTCAGGTAACATTGTGACGAGTGTTCA 179
|||||||||||||| ||||||||||||||||| || |||||||| | | |||||||||
Sbjct 266 ATTCGTTAAGAATGCTGCTGGACAGAGCCAAGCTTCTGGTAACATACTCAAGAGTGTTCA 325
Query 180 GAGTGGGC-TTTCAAGCTCACGTGAAAGGAGAAAGAGAATAGCTAGAGATGAG-TTAAGG 237
|||| ||| | ||||||||||||||||||| || |||| ||||| |||||| || | |
Sbjct 326 GAGT-GGCATGTCAAGCTCACGTGAAAGGATAATCAGAAAAGCTACTGATGAGCTT-ATG 383
Query 238 AATTTGAAAGATGCCTTGGGAATTGGTGATGAGAGAGATGATGTGATTGTCATGGCTGCC 297
||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||| |
Sbjct 384 AATTTGAGAGATGCTTTGGGAATTGGTGATGACAGAGATGATGTTATTGTCATGGCT-TC 442
Query 298 GAA-TTCTTTGA-AATGGCAAC-TGACCAAAACTTCACTAAAGGGCGCAG-AACTGAACT 353
|| |||||| | ||| || || ||| || || ||||||||||| || || || |||||
Sbjct 443 TAATTTCTTT-AGAATTGC-ACTTGATCATAATTTCACTAAAGGCCGTAGCAA-AGAACT 499
Query 354 TGTACAGTCTTCCTGTCTCTACTTGACTTGCAGGGAAAAGAAAATT-CCGTTTCTTCTTA 412
||| ||||| ||||||||||||||||||| || || ||||| || |||||||||
Sbjct 500 AGTATTCTCTTCATGTCTCTACTTGACTTGCA-GGCAATTCAAATTGGCGGTTCTTCTTA 558
Query 413 TTGATTTTTCAAGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAAC 472
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 559 TTGATTTTTCAAGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAAC 618
Query 473 TCTGTGAAATGCTGTACCTTGT-GCAAAACGAGAACTATGAGGAGCTTGTTGATCCTTCA 531
||||||| ||||| ||| || | ||||| | ||||||||| | |||||||||||||||
Sbjct 619 TCTGTGACATGCTCTACATTACAG-AAAACCACAACTATGAGAAACTTGTTGATCCTTCA 677
Query 532 ATCTTCATTCCTCGATTCATGAA-CAACTTATTGAAAGGTGCACACAATATAACAAAAAA 590
|| ||||||||||||||| | || || |||||||||||||||||||||| | |||
Sbjct 678 ATTTTCATTCCTCGATTC-TCAAACATGTTATTGAAAGGTGCACACAATA-AT-AAAC-- 732
Query 591 TGTCTGGGATAAGGTCTTTGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTG 650
| | | | | || ||||||||| |||||||| |||||||||||||||||||
Sbjct 733 T--C-G---T--G--CTA----ACGGCTACACACATTATAGCTAGTATGAAGAGAGATTG 778
Query 651 GATGCAGACCGGCCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACT 710
|||||||||||| |||||||||||||||||||||||||||||| | || | |||||||||
Sbjct 779 GATGCAGACCGGACGGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACT 838
Query 711 TTCTCATGGTATCATGTGCTCTA-GAGCAGATATTGCAAAAATTGTGCATATGTGTGAAG 769
|||||||||||||| |||||| | || ||||||| | || ||||||||||| || ||||
Sbjct 839 TTCTCATGGTATCAAGTGCTCCAAGA-CAGATATCGTGAACATTGTGCATATATGCGAAG 897
Query 770 CAACAATAACCAAAAGATTGAATGAGTTTGCTA-ATACCAAGGCTGGAAGTTTAACTGTT 828
|||| |||| |||||||||| |||||||| | ||||| |||||| |||||| ||||
Sbjct 898 CAACCCTAACTAAAAGATTGATTGAGTTTGG-AGATACCGAGGCTGCAAGTTTGACTGCA 956
Query 829 GATGAGCTT-GATAAAAGC-GAACCGATATCGCGTAAA-GAA-GCTTTT--ACCCCAA-G 881
|||||||| | ||||| | ||| || | | ||| | || || | || |
Sbjct 957 GATGAGCTCAG-TAAAA-CTGAAA-GAGAAAAAG-AAACGGCTGCATTGCGAAGTAAAAG 1012
Query 882 -A--CCAAATTCTGAC---GAAGGAGTAGTGAACTGTCAA-CAT-AAGGATT-TAAAACG 932
| ||||||| | || |||||||||||| |||| | ||| ||| ||| |||| |
Sbjct 1013 GAAGCCAAATTTTTACAAAGAAGGAGTAGTGCTCTGT-ATGCATCAAG-ATTGTAAACC- 1069
Query 933 TTTTGGTTATGGATTATGTAAGAGCTGTCACGATGATTTCATTAAAATTTCTGGTGGAAT 992
| ||| ||||||||||||| |||||||| ||||||| ||||| | | ||||||||||| |
Sbjct 1070 TGTTGATTATGGATTATGTGAGAGCTGTTACGATGAATTCATGACAGTTTCTGGTGGACT 1129
Query 993 TGTTGGTGGGTCGGATCCTCCTGCTTTCCAGCGAGCAGAGAAAGAGAGAATGGA--AAAA 1050
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1130 TGAAGGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAA 1189
Query 1051 -GCAGCTAGAGAAGAAAA 1067
|| |||| ||||||||
Sbjct 1190 AGCTTCTAGTGAAGAAAA 1207
> AT1G30455.1 | Symbols: | transcription regulators;translation
initiation factors;zinc ion binding;transcription activators
| chr1:10769722-10770775 FORWARD LENGTH=765
Length=765
Score = 161 bits (87), Expect = 2e-38
Identities = 177/216 (82%), Gaps = 24/216 (11%)
Strand=Plus/Plus
Query 508 TATGAGGAGCTTGTTGATCCTTCAATC-TTCATTCCTCGATTCAT-GAACAACTTATTGA 565
|||||| | |||||||||||||||| | ||||||||||||||| | ||||| |||||||
Sbjct 28 TATGAGAACCTTGTTGATCCTTCAA-CTTTCATTCCTCGATTC-TCAAACAAGTTATTGA 85
Query 566 AAGGTGCACACAATATAACAAAAAATGTCTGGGATAAGGTCTTTGGTACGGCTACAAACA 625
||||||||||||||| | | || ||| | | | | ||||||||| |||
Sbjct 86 AAGGTGCACACAATA-AGC----AA-GTC---G-T---G-----GAAACGGCTACACACA 127
Query 626 TTATATCTAGTATGAAGAG-AGATTGGATGCAGACCGGCCGGAAACCAAGTGGAATATGT 684
||||| ||||||||||||| | | |||||||||||||| |||||||||||||||||||||
Sbjct 128 TTATAGCTAGTATGAAGAGTA-ACTGGATGCAGACCGGACGGAAACCAAGTGGAATATGT 186
Query 685 GGAGCAGCAATTTACATAGCTGCACTTTCTCATGGT 720
||||||||| | || | |||||||||||||||||||
Sbjct 187 GGAGCAGCACTCTATACAGCTGCACTTTCTCATGGT 222
Score = 80.5 bits (43), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 5/76 (7%)
Strand=Plus/Plus
Query 996 TGGTGGGTCGGATCCT-CCTGCTTTCCAGCGAGCAGAGAAAGAGAGAATGGA--AAAA-G 1051
|||||| ||||||||| ||| | ||||||||||||||||||||||||||||| |||| |
Sbjct 219 TGGTGGCTCGGATCCTCCCT-CCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAG 277
Query 1052 CAGCTAGAGAAGAAAA 1067
| ||| |||||||||
Sbjct 278 CTTCTACAGAAGAAAA 293
> AT1G42650.1 | Symbols: | transposable element gene | chr1:16028191-16034022
REVERSE LENGTH=5832
Length=5832
Score = 156 bits (84), Expect = 8e-37
Identities = 101/108 (94%), Gaps = 5/108 (5%)
Strand=Plus/Plus
Query 444 TTACGAGTTAGG-TTCTGTGTACTTGCAACTCTGTGAAATGCTGTACCTTGTGCAAAACG 502
|||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 937 TTACGAGTTAGGTTTC-GTGTACTTGCAACTCTGTGAAATGTTGTACCTTGTGCAAAAC- 994
Query 503 A-GAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCTCGATTC 549
| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 995 ACGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCTTC-ATTC 1041
Score = 135 bits (73), Expect = 1e-30
Identities = 79/82 (96%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 63 GGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCTACTGATGTTACCTT 122
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 111 GGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTTAATTTTTCTAATGATGTTACCTT 170
Query 123 CGTTAAGAATGCCGCTGGACAG 144
|||||||||||||||| |||||
Sbjct 171 CGTTAAGAATGCCGCTTGACAG 192
Score = 78.7 bits (42), Expect = 2e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 385 AGGGAAAAGAAAATTCCGTTTCTTCTTATTGATTTTTCAAGCTACCTTCGAGTT 438
||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 775 AGGGAAATGAAAATTTTGCTTCTTCTTATTGATTTTTCAAGCTACCTTCGAGTT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5