BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316775

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G78790.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   544    2e-154


> AT1G78790.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); 
Has 69 Blast hits to 69 proteins in 28 species: Archae 
- 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; 
Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:29623529-29625078 
REVERSE LENGTH=696
Length=696

 Score =  544 bits (294),  Expect = 2e-154
 Identities = 308/315 (98%), Gaps = 0/315 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGCGAACAATACCTTCGATTCTGATCTGATTCACGCCATTTTTAAGCACATTTGG  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATGGACGCGAACAATACCTTCGATTCTGATCTGATTCACGCCATTTTTAAGCACATTTGG  208

Query  61   GCCCGAAGATTTCGCGAAAGGGAGAGGAGCGATGCCATTGATGCTACGGAAGCTGAGATT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  209  GCCCGAAGATTTCGCGAAAGGGAGAGGAGCGATGCCATTGATGCTACGGAAGCTGAGGTT  268

Query  121  GCTCTGGGAACAACCAAGAAGAACAGGCTTGCTTCTGCAAACGCAAATGCTTTAAAACTC  180
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  269  GCTCTGGGAACAACCAAGAAGAACAGACTTGCTTCTGCAAACGCAAATGCTTTAAAACTC  328

Query  181  AGCTGTGAACTTCTCAAGAGTTTTGTCTCAGAGGCTGTGCAGCGTGCTGCTATAATCGCT  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  329  AGCTGTGAACTTCTCAAGAGTTTTGTCTCAGAGGCTGTGCAGCGCGCTGCTATAATCGCT  388

Query  241  GAAGCTGAGGGAATGGACAAGATTGAAGCTACTCATTTAGAGAGGATTCTTCCCCAACTT  300
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  389  GAAGCTGAGGGAATGGAAAAGATTGAAGCTACTCATTTAGAGAGGATTCTTCCCCAGCTT  448

Query  301  CTTTTGGACTTTTAA  315
            ||| |||||||||||
Sbjct  449  CTTCTGGACTTTTAA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5