BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316788
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78915.3 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1138 0.0
> AT1G78915.3 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29667685-29671341 REVERSE LENGTH=1522
Length=1522
Score = 1138 bits (616), Expect = 0.0
Identities = 682/715 (95%), Gaps = 0/715 (0%)
Strand=Plus/Plus
Query 441 TGATAGTCCAACAAAGAACACCACAGTAGTCAAAAATCAGATCTCAGAAGAAGAGAAAGC 500
|||||||||||| |||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 764 TGATAGTCCAACTAAGAACACAACAGTAGTTAAAAATCAAATTTCAGAAGAAGAGAAAGC 823
Query 501 CACGCTTCAGCAAAGGCTCAAAGAGTTTGAAACAACTCTCAATGGCACTCCTAAGGATCA 560
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 824 CACGCTTCAGCAAAGGCTCAAAGAGTTTGAAACAACTCTCAATGGCACGCCTCAGGATCA 883
Query 561 AGCTGCTCTGGAGGGCGCAGCTGTGACACTGACTGAACTTGGAGAGTATTCCCGGGCTGC 620
||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 884 AGCTGCTCTGGAGGGTGCAGCTGTGACACTGACTGAACTAGGAGATTATTCACGGGCTGC 943
Query 621 TGCGTTTCTTGAGAAACTGGCTAAGGAGAGACCAACTGACCCTGATGTATTTCGACTGCT 680
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TGCGTTTCTTGAGAAACTCGCTAAGGAGAGACCAACTGACCCTGATGTATTTCGACTGCT 1003
Query 681 CGGAGAAGTAAATTATGAACTTAAGAACTATGAAGGCAGTATTGCTGCATACAGAATTTC 740
||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1004 TGGAGAAGTAAATTATGAACTTAACAACTATGAAGGCAGTATCGCTGCATACAAAATTTC 1063
Query 741 TGATAAGGTTTCTAAAGGGATTGACCTTGAAGTCACACGAGGCCTCATGAACGCATATTT 800
||| |||||||||||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 1064 TGAAAAGGTTTCTAAAGGGATTGATCTTGAAGTTACACGAGGCCTCATGAATGCGTATTT 1123
Query 801 AGCTGCTAAGAAACCAGACGAGGCCGTCAAATTTCTTCTAGACACTCGTGAACGTCTGAA 860
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 AGCTGCGAAGAAACCAGACGAGGCCGTCAAATTTCTTCTAGACACTCGTGAACGTCTGAA 1183
Query 861 TACAAAGAAAACAAGCTCAGCAGACAGTGTTACAGATGAAACAAATCTAGACCCAATTCA 920
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TACAAAGAAAACAAGCACAACTGACAGTGTTACAGATGAAACAAATCTAGACCCAATTCA 1243
Query 921 GGTTGAGTTGCTTCTCGGAAAAGCTTATTCAGACTGGGGACATATCAGCGACGCCATAGC 980
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1244 GGTTGAGTTACTTCTCGGAAAAGCGTATTCAGACTGGGGACATATCAGCGACGCGATAGC 1303
Query 981 TGTTTATGACCAGCTAATCAGTGCTCATCCTGAAGACTTCCGGGGCTACTTGGCTAAGGG 1040
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1304 TGTTTATGACCAGTTAATCAGTGCTCATCCTGAAGACTTCCGAGGCTACTTGGCTAAGGG 1363
Query 1041 AATTATATTGAGAGAAAATGGAAGCAGAGGAGATGCAGAGAGAATGTTCATCCAGGCACG 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1364 AATTATATTGAGAGAAAATGGAAGCAGAGGAGATGCAGAGAGAATGTTCATCCAGGCGCG 1423
Query 1101 CTTTTTTGCACCAGACAAAGCTAAGGCCCTTGTGGATAGATACTCCAAACTGTGA 1155
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1424 CTTTTTTGCACCAAACAAAGCTAAGGCCCTTGTGGATAGATACTCCAAACTATGA 1478
Score = 682 bits (369), Expect = 0.0
Identities = 417/440 (95%), Gaps = 3/440 (1%)
Strand=Plus/Plus
Query 1 ATGACACTAGCGGCAGCGACGACCGCCGTTTCATTTAACTCAAAGCTTCTCGTGTTTAGA 60
||||||||||| | ||||||||| |||||||||||||||| ||||||||| | ||| ||
Sbjct 267 ATGACACTAGC-G--GCGACGACCTCCGTTTCATTTAACTCGAAGCTTCTCCTATTTCGA 323
Query 61 ATTCGTTGCTCAGATTCTAATCCTAAACGTGGCTTTGGCTCTAAAAAGGAAGAGAAAGAC 120
|| |||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct 324 ATACGTTGCTCGGATTCTAACCCTAAGCGTGGCTTCGGCTCAAAAAAGGAAGAGAAAGAC 383
Query 121 CCGGCATTGCAGCAAAGGAAATCATCTTCTAAACAGTCTGTTTCGGTACCCAGAAAGGCA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 384 CCGGCATTGCAGCAAAGGAAATCATCTTCTAAACAGTCTGTTTCTGTACCCAGAAAGGCA 443
Query 181 CCTGGTCTGAATACTCAATTTGAAGGAAAATCTGGTCCATCTTTCGATATTGACTTCGAG 240
||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 444 CCTGGTCTGAATACTCAGTTTGAAGGAAAATCTGGTCGATCTTTTGATATAGACTTCGAT 503
Query 241 GAACGGCTGGAAAACATCAGAAGGTCAGCTCTTGAGCAGAAAAAGACAGAAGTAATTAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 504 GAACGGCTGGAAAACATCAGAAGGTCAGCTCTTGAGCAGAAAAAGACAGAAGTAGTTAAA 563
Query 301 GAATTTGGTCCAATTGACTATGATGCACCGGTCAAGTCTGACCAGAAAACAATTGGTCTT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 564 GAATTTGGTCCAATTGACTATGATGCACCAGTCAAGTCTGACCAGAAAACAATTGGTCTT 623
Query 361 GGTACTAAGGTTGGAGTTGGCATAGCTGTTGTTGTATTTGGTTTGGTTTTTGCTCTTGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GGTACTAAGGTTGGAGTTGGCATAGCTGTTGTTGTATTTGGTTTGGTTTTTGCTCTTGGT 683
Query 421 GACTTTCTTCCCACGGGAAG 440
||||||||||||||||||||
Sbjct 684 GACTTTCTTCCCACGGGAAG 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5