BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316796
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78990.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2100 0.0
AT1G78995.1 | Symbols: | unknown protein; Has 30201 Blast hits... 318 1e-85
> AT1G78990.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:29713531-29714969 REVERSE LENGTH=1368
Length=1368
Score = 2100 bits (1137), Expect = 0.0
Identities = 1291/1368 (94%), Gaps = 0/1368 (0%)
Strand=Plus/Plus
Query 352 ATGGGAGAAGCGGCGGAGCAAGCACGTGGCTTCCACATGACCACCACTAGGAAGCAAGTC 411
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1 ATGGGAGAAGCGGCGGAGCAAGCACGTGGCTTCCACGTGACCACCACCAGGAAGCAAGTC 60
Query 412 ATCACGGCGGctcttcctctccaggaccactggctccctctctcgaacctcgacctcctc 471
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATCACGGCGGCTCTTCCCCTCCAGGACCACTGGCTCCCACTCTCGAACCTCGACCTCCTC 120
Query 472 cttcctcctctcGACGTTAACGTTTGCTTCTGCTACAAGAAACCACTTAACATTACCAAC 531
|||||||||||| ||||| |||||||||| |||||||||||||||||| || ||||||||
Sbjct 121 CTTCCTCCTCTCAACGTTCACGTTTGCTTTTGCTACAAGAAACCACTTCACTTTACCAAC 180
Query 532 ACAGTGGCTCATGAAACCCTCAAGACGGCTTTGGCAGAGACTCTCGTCTCCTACTACGCC 591
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ACAGTGGCTTATGAAACCCTCAAGACTGCTTTGGCAGAGACTCTCGTCTCCTACTACGCC 240
Query 592 TTTGCCGGTGAGGTCGTCACCAATCCTACCGGAGAACCGGAGATTCTCTGCAACAATCGT 651
|||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 241 TTTGCCGGCGAGCTCGTCACCAATCCTACCGGAGAACCGGAGATCCTCTGCAACAACCGT 300
Query 652 GGCGTAGATTTCGTGGAAGCCGGTGCTGACGTGGAGCTCCGAGAGCTTAACCTGTATGAT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCGTAGATTTCGTGGAAGCCGGTGCTGACGTGGAGCTCCGAGAGCTTAACCTGTATGAT 360
Query 712 CCTGATGAAAGTATTGCCAAGCTAGTCCCCATCAAGAAACATGGAGTCATAGCGATACAG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTGATGAAAGTATTGCCAAGCTAGTCCCCATCAAGAAACATGGAGTCATAGCGATACAG 420
Query 772 GTGACTCAACTGAAATGTGGGAGCATAGTTGTTGGCTGCACATTTGATCATCGTGTAGCG 831
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GTGACTCAACTGAAATGTGGGAGCATAGTTGTAGGCTGCACATTTGATCATCGTGTAGCG 480
Query 832 GACGCGTATTCCATGAACATGTTCCTCTTATCTTGGGCCGAGATCGCACGATCCGATGGA 891
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |
Sbjct 481 GACGCGTATTCCATGAACATGTTCCTCTTATCGTGGGCCGAGATCTCACGATCAGATGTA 540
Query 892 CCAATCTCTTGTGTACCATCTTTCCGAAGATCTTTGCTAAACCCACGACGACCATTGATC 951
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 541 CCAATCTCTTGTGTACCATCTTTTCGAAGATCTTTGCTAAACCCACGACGACCATTGGTC 600
Query 952 GTGGATTCATCTATAGACCAGATTTATATGCCTGTCACGTCCTTGCCCCCTCCACAAGAA 1011
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 ATGGATCCATCTATAGACCAGATTTATATGCCTGTCACGTCCTTGCCCCCTCCACAGGAA 660
Query 1012 ACCACCAATCCAGAAAATCTCCTTGCGAGCCGCATCTATTACATCAAAGCGGATGCATTA 1071
|||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||
Sbjct 661 ACCACCAATCCAGAAAATCTCCTTGCTAGCCGTATCTATTACATCAAAGCAAACGCATTA 720
Query 1072 GAAGAACTCCAAACTCTAGCCAGCAGCTCAAAGAACAGTAAAAGGACGAAACTCGAATCG 1131
|||| |||||||||||||||||||| || |||||| |||||||||| ||||| |||||
Sbjct 721 CAAGAGCTCCAAACTCTAGCCAGCAGTTCGAAGAACGGTAAAAGGACAAAACTTGAATCA 780
Query 1132 TTTAGCGCGTTTCTGTGGAAGCTCGTGGCAGAACACGCTGCAAAAGATCCAGTCCCAAGC 1191
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 781 TTCAGCGCGTTTCTATGGAAACTCGTGGCAGAACACGCTGCAAAAGATCCAGTCCCGATC 840
Query 1192 AAGACCTCGAAACTCGGGATCGTCGTGGACGGAAGGAGGAGACTTATGGAGCAAGAAAAC 1251
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 841 AAGACCTCGAAACTCGGGATCGTTGTGGATGGAAGGAGGAGACTTATGGAGAAAGAAAAC 900
Query 1252 AAGACTTACTTCGGAAACGTTCTCTCAATCCCATTTGGTGGGCAGAGAATCGATGACTTG 1311
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 AATACTTACTTCGGAAACGTTCTCTCAGTCCCATTTGGTGGGCAGAGAATCGATGACTTG 960
Query 1312 ATCAGCAAACCACTGTCTTGGGTGACTGAAGAGGTTCACAGATTCTTGGAGAGATCAGTA 1371
|||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 961 ATCAGCAAGCCACTATCTTGGGTGACCGAAGAGGTTCACAGATTCTTGAAGAAATCAGTG 1020
Query 1372 ACCAAAGAACATTTCTTGAATTTGATCGATTGGGTTGAGACTCGCCGTCCAACACCCGCG 1431
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 1021 ACCAAAGAACATTTCTTGAATTTGATCGATTGGGTTGAGACTTGCCGACCAACACCTGCG 1080
Query 1432 GTTTCAAGAATCTACGGCGACGGATCCGACAATGGACCCGCGTTTGTGGTTTCTTCTGGG 1491
||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| ||
Sbjct 1081 GTTTCAAGAATCTACAGCGTCGGATCCGACGATGGACCTGCGTTTGTGGTTTCTTCCGGA 1140
Query 1492 AGAAGTTTTCCGGTGACCCAAGTGGATTTCGGGTGGGGCTCACCAGTTTTCGGAACTTAC 1551
|| |||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1141 AGGAGTTTTCCAGTGAACCAAGTGGATTTCGGGTGGGGCTCACCGGTTTTCGGATCTTAC 1200
Query 1552 CATTTCCCATGGGGAGGCAGCGCCGGATACGTTATGCCAATGCCGAGCGCAGTGGAAGAT 1611
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||
Sbjct 1201 CATTTCCCATGGGGAGGCAGCGCCGGATACGTTATGCCGATGCCCAGTTCAGTGGACGAC 1260
Query 1612 GGAGATTGGATGGTTTACTTGCTCCTTACGAAAGGACAGTTGAAGTTCATTGAGGAAGAG 1671
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1261 AGAGATTGGATGGTTTACTTGCACCTTACGAAAGGACAGTTGAGGTTCATTGAGGAAGAG 1320
Query 1672 GCTTCTCATGTGCTTAAACCTATTGACAATGATTATCTCAAGATTTGA 1719
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCTTCTCATGTGCTTAAACCTATTGACAATGATTATCTCAAGATTTGA 1368
> AT1G78995.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29715079-29716111
REVERSE LENGTH=866
Length=866
Score = 318 bits (172), Expect = 1e-85
Identities = 202/216 (94%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGCTGTGTCTGTAGCTTCTGCAGAGCTTCCTCCGCCGCCGCCGCAAGACGGAGAA 60
|||||||||||||| |||||||| ||||||| | ||| |||||||||||||| ||||||
Sbjct 198 ATGGCTGCTGTGTCCGTAGCTTCAGCAGAGC-T--TCCACCGCCGCCGCAAGATGGAGAA 254
Query 61 ACGTTATCGAACATACCGCAAACGCTGTCTGGCGAAGGCTGTAAGAAACAGAGGATTCAA 120
|||||||| ||| |||||||||||||||| || |||| |||||||||||||||||| |||
Sbjct 255 ACGTTATCTAACGTACCGCAAACGCTGTCAGGGGAAGACTGTAAGAAACAGAGGATCCAA 314
Query 121 CGACCAAAATCCAAAAACGCAGAGAAATGTACAGTCAAATGCGTCAACACTTGCATTCGC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 315 CGACCAAAATCCAAAAACGCAGAGAAATGTACAGTCAAATGCGTAAACACTTGCATTCGC 374
Query 181 AGCGGAGACGGAGAAGGACCGATCAATATCAGAAGG 216
||||||||||||||||||||||||||||||||||||
Sbjct 375 AGCGGAGACGGAGAAGGACCGATCAATATCAGAAGG 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5