BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316805

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79070.1 | Symbols:  | SNARE-associated protein-related | ch...   616    7e-176


> AT1G79070.1 | Symbols:  | SNARE-associated protein-related | 
chr1:29744670-29745815 REVERSE LENGTH=773
Length=773

 Score =  616 bits (333),  Expect = 7e-176
 Identities = 390/418 (93%), Gaps = 2/418 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGCAGCTATCAGAATCCGACCACCGCGATTCAGCTGATGCGACTACTAGCTCGTGT  60
            ||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct  9    ATGGAGCAGCTATCAGACTCGGACCACCGCGATTCTGCTGATGCAACTACTAGCTCATGT  68

Query  61   CAATCCACCGCCGCAGAAGATGGTGAAGT-CGGTGGCGGTGGAGAAGCTATGGCTCGAGG  119
            ||||||||| |||||||||||||| || | ||| ||||| |||||||| |||||||||||
Sbjct  69   CAATCCACCACCGCAGAAGATGGTCAA-TGCGGCGGCGGCGGAGAAGCAATGGCTCGAGG  127

Query  120  CTTATCAGCGATGCTGGAGTCCGTCATTAAAGACTTTGACTCTAAAGCTCTTGACACGCT  179
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  CTTATCAGCGATGCTCGAGTCCGTCATTAAAGACTTTGACTCTAAAGCTCTTGACACGCT  187

Query  180  CAATAGCCAAGATCAACTCTCCGGTTCGCTCGATCGCCTTGTCCAAGAGCTTGATCAATT  239
            ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  188  CAATAGCCAAGATGAACTCTCCGGTTCTCTCGATCGCCTTGTCCAAGAGCTAGATCAATT  247

Query  240  GCTGGAAAACGCTCCATTGCCGTTCATAGTACAACACGCATCAAGAATCTCCAGTGTCAA  299
             |||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct  248  ACTGGAAAACGCTCCATTGCCATTCATTGTACAACACGCATCGAGAATTTCCAGCGTCAA  307

Query  300  ACAAAGAGTTTCATCTCTCAATCTTGTGCTTAAATCTGTCCAACGACGTATTGATAACAT  359
            |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct  308  ACAAAGAGTTTCATCTCTGAATCTTGTTCTTAAATCTGTCCAACGACGTATCGATAACAT  367

Query  360  TGATCACATGCTCTCTGCCAACACCACGCTAGAGAAAACATCCTCGGAAACTACATGA  417
             |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  368  CGATCACATGCTCTCTGCCAACACCACGCAAGAGAAAGCATCCTCGGAAACTACATGA  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5