BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316812
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 889 0.0
AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 156 3e-37
> AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16500.1);
Has 104 Blast hits to 102 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29779721-29780773
REVERSE LENGTH=966
Length=966
Score = 889 bits (481), Expect = 0.0
Identities = 661/740 (89%), Gaps = 43/740 (6%)
Strand=Plus/Plus
Query 1 ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAA 165
Query 61 GATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCGAAATCCACGGCGGCGCTGATGACT 120
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 166 GATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCCAAATCCTCGGCGGCGCTGATGACT 225
Query 121 CGTGACCTTCTTGGAAGCGGCAGAGGAGGAGG---CGATCGGTCATTAGAGCTTGACCTC 177
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 226 CGTGACCTTCTTGGAAACGGCAGAGGAGGAGGAGGCGATCGGTCTTTAGAGCTTGACCTC 285
Query 178 GACCTTCAAGTCCCCACCGGTTATGAAAAACGTCTCGACTTGAAGTCAGGGAAAGTGTAT 237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 286 GACCTTCAAGTCCCCACCGGTTATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTAT 345
Query 238 TTGCAACGATGTAATTCAACGAGCTCATCGTCAATAACAAACGCAGCAGACCAATCCAAT 297
||||||||||| |||||||||||||| ||||||||||||||||||| | |||| |||||
Sbjct 346 TTGCAACGATGCAATTCAACGAGCTCGTCGTCAATAACAAACGCAG-A--CCAAACCAAT 402
Query 298 CAAACAGTACCGACCTTTCAGGATTTGAATTTTCCTCC---GACTTCT-AGTAATTCTCC 353
||||||||||| || ||||||||||||||||||||||| ||||| | | ||||||||
Sbjct 403 CAAACAGTACCAACGTTTCAGGATTTGAATTTTCCTCCTCCGACTT-TGAACAATTCTCC 461
Query 354 TTTGTTGAACCTCTTCGACGACACGACAACCCCGGAACTGAAGCTACTTCCGTCGTCTCG 413
||||||||||||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 462 TTTGTTGAACCTCTTCGACGATAC-A-A-CGCCGGAACTGAAGCTACTTCCGTCGTCTCG 518
Query 414 TTCTCGTCCTCTATCTATATCGCCGAACGCTAGTAATTTCCAGAGTGTATGCACACTCGA 473
|||| || || || || ||| |||||||||| ||||||||||||||||| ||
Sbjct 519 TTCT--TC-TCG-TC-----CG---AACACTAGTAATTTACAGAGTGTATGCACACTGGA 566
Query 474 CAAGGTGAAGTCAGCTCTTGAGAGAGCGGAGAGAGATCCGGCTATGTTCAAGAAACGTCA 533
||||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 567 CAAGGTGAAATCAGCTCTAGAGAGGGCAGAGAGAGATCCTGCTATGTTCAAGAAACGTCA 626
Query 534 ATCGCCGGATCAT----T--A---TC------GGACGGAGGTTGTTG-GCTCACCGGTGG 577
||| |||||| || | | || ||||||||| ||| | | ||||||||||
Sbjct 627 ATCACCGGATGATACGGTTTACGATCATTATAGGACGGAGGCTGTAGCG-TCACCGGTGG 685
Query 578 CGGCTGGATGTCCTGGATGTTTATCGTATGTTTTGGTGATGATGAACAACCCGAAATGTC 637
|| ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||
Sbjct 686 TTGCCGGATGTCCTGGTTGTTTATCGTACGTGTTGGTGATGATGAATAACCCGAAATGTC 745
Query 638 CGAGGTGTGATACCATTGTTCCTTTGCCTACAAATTCTATGAAGAAGAAGCCTAAGATTG 697
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 746 CGAGGTGTGATACCATTGTTCCTTTGCCTACAAATCCTATGAAGAAGAAGCCTAAGATTG 805
Query 698 ATCTCAACATATCGATCTGA 717
||||||||||||| ||||||
Sbjct 806 ATCTCAACATATCAATCTGA 825
> AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G79160.1);
Has 136 Blast hits to 134 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses
- 1; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5639032-5640173
FORWARD LENGTH=1005
Length=1005
Score = 156 bits (84), Expect = 3e-37
Identities = 226/290 (78%), Gaps = 27/290 (9%)
Strand=Plus/Plus
Query 5 TTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGC-GGTTACAAAGAT 63
|||||| ||||||||||||||||||||||||||||||| |||| || |||| ||| |||
Sbjct 40 TTCTTGGTATGGCTGCTGACGTCAGCTCTCTCGTACGGATACTGAGTAGGTT-CAAGGAT 98
Query 64 GATCG-AGCGGTGGTTAAAGATTCTGCCGGAGCGAA-ATCCACGGCGGCGCTGATGACTC 121
||||| | |||| || |||||||| ||||| | || |||||||| |||||| ||||| |
Sbjct 99 GATCGGA-CGGTTGTAAAAGATTCCACCGGACC-AAGATCCACGGTGGCGCTCATGACAC 156
Query 122 GTGACCTTCTTGGAAGCGGC--------------AG-AGGAGGAGG---CGATCGGTCAT 163
| || || || |||| |||| || ||||||||| ||| | |||
Sbjct 157 GCGATCTCCTCGGAATCGGCGGTTGTGTGGGTGGAGGAGGAGGAGGAGACGAACAGTCGC 216
Query 164 TAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTTATGAAAAACGTCTCGACTTGAAGT 223
| ||||||||||| ||| | |||||||| | ||| | ||||||||||||||||| ||||
Sbjct 217 TGGAGCTTGACCTTGACGTCCAAGTCCCTAACGGATGGGAAAAACGTCTCGACTTAAAGT 276
Query 224 CAGGGAAAGTGTATTTGCAACGA---TGTAATTCAACGAGCTCATCGTCA 270
|||||||||||||| |||||| | || |||||||||||||| || |||
Sbjct 277 CAGGGAAAGTGTATCTGCAACAACAATGCAATTCAACGAGCTCGTCATCA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5