BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316818
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79250.1 | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810134-... 2584 0.0
AT1G16440.1 | Symbols: RSH3 | root hair specific 3 | chr1:56158... 822 0.0
> AT1G79250.1 | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810134-29812218
REVERSE LENGTH=1902
Length=1902
Score = 2584 bits (1399), Expect = 0.0
Identities = 1586/1677 (95%), Gaps = 9/1677 (1%)
Strand=Plus/Plus
Query 1 ATGTTAACGAAGCCCGGAAAGAAGCTTGACTCTTCAGAGCCAAAATCAACTCATCATACA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 33 ATGTTAACGAAGCCCGGAAAGAAGCTTGACTCTTCAGAG------TCAACTCATCATACT 86
Query 61 ACGAGTTCCAATTATCCACCGTTAGATATTGTTCATCAAACTCCACAACCACGTAAAGAG 120
|||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 87 ACGAGTTCAAACTATCCACCATTAGATATTGTTCATCAAACTCCACAACCACGCAAAGAG 146
Query 121 ATGCAACAAAGGCCATTGTTCGATCCCAAGAAGATGGATAATCTTATAAAACCAGAGCCA 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 147 ATGCAACAAAAGCCATTGTTCGATCCCAAGAAGATGGATAATCTTATAAAACCGGAGCCA 206
Query 181 GCTGGGTTCAGTAATCATCACCGTCCAATCCCTAGTCCAAAAATCCCATCCTCACCTGGT 240
|||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 207 GCTGGGTTCACCAATCACCACCGTCCAAACCCTAGTCCAAAAATCCCATCCTCACCTGGT 266
Query 241 TCCAGCATGGCCGAGTCacaatcaaacctaaacaccaaaccaagcaacaacaacagtaac 300
|||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 267 TCCAACATGACCGAGTCACAATCAAACTTAAACACCAAACCAAACAACAACAACAGTAAC 326
Query 301 aacaaTAGCAATATGAGTTCAAGAAGCAACAGCATTGAGAGCACTTCCTCTAATCCCTCT 360
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 327 AACAATAGCAATATGAGCTCAAGAAGCAACAGCATTGAGAGCACGTCCTCTAATCCCTCT 386
Query 361 AAGCCACACACAGGTGGTGACATTAGGTGGGATGCTGTCAATATGTTGACCTCCAAAGGA 420
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 387 AAGCCACACACAGGTGGTGACATTAGGTGGGATGCTGTGAACACGTTGACCTCCAAAGGA 446
Query 421 GTCCAGCTCGGGATCAGCGATTTTCGGCTTCTTAAACGGCTCGGTTATGGAGACATTGGG 480
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 447 GTCCAGCTCGGTATCAGCGATTTCCGGCTTCTTAAACGGCTCGGTTATGGAGACATTGGG 506
Query 481 AGTGTTTACCTAGTCGAGCTCAGAGGAACCAACACCTATTTCGCCATGAAAGTGATGGAC 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 507 AGTGTTTACCTAGTCGAGCTCAGAGGAACCATCACCTATTTCGCCATGAAAGTGATGGAC 566
Query 541 AAAGCTTCCTTAGCTAGCAGGAACAAGCTGTTGCGAGCTCAAACAGAGAGAGAGATCTTG 600
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 567 AAGGCTTCCTTAGCTAGCAGGAACAAGCTTTTGCGAGCTCAAACAGAGAGAGAGATCTTG 626
Query 601 TCTCAGCTTGATCACCCCTTCCTGCCCACTCTATACTCGCATTTTGAAACAGATAAGTTC 660
||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||
Sbjct 627 TCTCAGCTTGATCACCCGTTCTTGCCCACTCTATACTCACACTTTGAAACAGATAAGTTT 686
Query 661 TATTGCTTAGTCATGGAGTTTTGTGGTGGTGGTAATCTCTATTCCTTGAGACAGAAGCAA 720
|||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 687 TATTGCTTGGTCATGGAGTTTTGTGGCGGTGGTAATCTCTATTCCTTGCGACAGAAGCAA 746
Query 721 CCAAACAAATGTTTCACAGAGGACGCCGCAAGATTCTTTGCTTCTGAAGTGCTATTGGCA 780
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 747 CCAAACAAGTGTTTCACAGAAGACGCGGCAAGATTCTTTGCTTCTGAAGTGCTATTGGCA 806
Query 781 TTGGAGTACTTGCACATGCTCGGAATTGTTTACCGTGACTTGAAGCCAGAAAATGTTCTA 840
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 807 TTGGAGTACTTGCACATGCTAGGAATTGTATACCGTGACTTGAAGCCAGAAAATGTTCTA 866
Query 841 GTCAGAGACGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTC 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 867 GTCAGAGATGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGCTCCGTC 926
Query 901 AGTCCAACCCTCGTCAAATCATCCTCTGTTCACGCCGCCGGCGGCGGAAGCGGAAGCAGT 960
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 927 AGTCCAACTCTCGTCAAATCATCCTCTGTTCATGCGGCCGGCGGCGGAAGCGGAAGTAGT 986
Query 961 CGGCCTGTAGGTCTAATCGACGAGGACGCGGCGGTGCAAGGTTGTATCCAACCGTCAACA 1020
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 987 CGACCTGTAGGTCTCATCGACGAGGACGCGGCGGTGCAAGGTTGTATCCAACCGTCCACA 1046
Query 1021 TTCTTCCCGCGGATTTTACAGTCGTCGAAGAGGAATCGAAAAGCGAAATCGGATTTCGGA 1080
|||||||| || || || ||||| || |||| ||||||||| |||||||| |||||||||
Sbjct 1047 TTCTTCCCACGCATCTTGCAGTCATCCAAGAAGAATCGAAAGGCGAAATCAGATTTCGGA 1106
Query 1081 CTCTTCGTTAACGGATCCATGCCAGAACTCATGGCGGAGCCAACGAACGTCAAATCAATG 1140
|||||||| |||||||||||||| ||||||||||| |||||||||||||| || ||||||
Sbjct 1107 CTCTTCGTCAACGGATCCATGCCGGAACTCATGGCAGAGCCAACGAACGTTAAGTCAATG 1166
Query 1141 TCATTCGTCGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGTGAAGGACACGGA 1200
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1167 TCATTCGTTGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGAGAAGGACATGGA 1226
Query 1201 AGCGCCGTAGATTGGTGGACCTTCGGAATTTTCATCTACGAGCTTCTCTATGGAGCGACG 1260
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1227 AGCGCCGTAGATTGGTGGACATTCGGAATTTTCATTTACGAGCTTCTCTATGGAGCGACG 1286
Query 1261 CCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATCGGACAAGCTTTAAGA 1320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1287 CCGTTTAAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATAGGACAAGCTTTAAGA 1346
Query 1321 TTCCCTGAGGTTCCTCATGTGAGCTCGGCGGCGAGAGATCTCATCAAAGGATTATTAGTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TTCCCTGAGGTTCCTCATGTGAGCTCGGCGGCGAGAGATCTCATCAAAGGATTATTAGTT 1406
Query 1381 AAAGAACCACAAAAACGAATCGCTTACAAACGTGGCGCGACGGAGATCAAGCAGCATCCG 1440
||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1407 AAAGAGCCGCAAAAACGAATCGCTTACAAACGTGGAGCGACGGAGATTAAGCAGCATCCG 1466
Query 1441 TTTTTCGAAGGTGTGAATTGGGCGCTGATTCGGAGTGCAACGCCGCCGCATGTACCAGAA 1500
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1467 TTTTTCGAAGGTGTGAATTGGGCGCTAATTCGGAGTGCAACGCCGCCGCATGTACCGGAA 1526
Query 1501 CCGGTGGATTTTTCGTGTTACGCAAGCAAGGATAAAGAGTCTATGGCGGCTGTTGACGGC 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 CCGGTGGATTTTTCGTGTTACGCAAGCAAGGATAAAGAGTCTATGGCGGCTGTTGACGGT 1586
Query 1561 GGCGGAAAGAAGAACAATATCGGTGCCGGAGGTGGTTGCAGCAGTGTCGGCGGTGGTGAT 1620
||||||||||||||||||| |||||| |||||||||||||| | |||||||||||||
Sbjct 1587 GGCGGAAAGAAGAACAATAACGGTGCTGGAGGTGGTTGCAGTAC---CGGCGGTGGTGAT 1643
Query 1621 AACAAATCTAACGGCGATTGCCATGATCCTGATTACATTGACTTTGAATATTTTTAG 1677
|||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1644 AACAAACCTAACGGCGATTGCAATGATCCTGATTACATTGACTTTGAATACTTTTAG 1700
> AT1G16440.1 | Symbols: RSH3 | root hair specific 3 | chr1:5615815-5617672
FORWARD LENGTH=1566
Length=1566
Score = 822 bits (445), Expect = 0.0
Identities = 1014/1278 (79%), Gaps = 81/1278 (6%)
Strand=Plus/Plus
Query 324 AAGCAACAGCATTGAGAGCAC-TTC-CT-CTAATCCCTCTAAGCCACACACAGGTGGTGA 380
|||||||| || || ||||| | | || |||| |||||||||| ||||| || || ||
Sbjct 242 AAGCAACAACAGCGAAAGCACATCCACTAATAATTCCTCTAAGCCTCACACGGGAGGAGA 301
Query 381 CATTAGGTGGGATGCTGTCAATAT-GTTGACCTCCAAAGGAGTCCAGCTCGGGATCAGCG 439
||||||||||| || || ||| | |||| || | |||| || |||| || |||||||
Sbjct 302 TATTAGGTGGGACGCAGTGAAT-TCCTTGAAATCTAGAGGAATCAAGCTTGGAATCAGCG 360
Query 440 ATTTTCG-GCTTCTT-AAACGGCTCGGTTATGGAGACATTGGGAGTGTTTACCTAGTCGA 497
||||||| | || || |||||||| || || ||||| || || |||||||| || || ||
Sbjct 361 ATTTTCGTG-TT-TTGAAACGGCTAGGCTACGGAGATATCGGTAGTGTTTATCTTGTTGA 418
Query 498 GCTC--AGAGG--AA-CCAAC-ACCTATTTCGCCATGAAAGTGATGGACAAAGCTTC-CT 550
||| || || || || || || |||||||| ||||||||||||||||| ||||| ||
Sbjct 419 ACTCAAAGGGGCAAATCCCACGACGTATTTCGCGATGAAAGTGATGGACAAGGCTTCTCT 478
Query 551 TAGCT-AGCAGGAACAAGCTGTTGCGAGCTCAAACAGAGAGAGAGATCTTGTCTCAGCTT 609
| | | |||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 479 T-G-TGAGCAGGAACAAGCTGTTGAGAGCTCAGACTGAAAGAGAGATCTTGTCTCAGCTT 536
Query 610 GATCACCCCTTCCTGCCCACTCTATACTCGCATTTTGAAACAGATAAGTTCTATTGCTTA 669
||||| || ||| |||| ||||| ||||| || || ||||| ||||| |||||||||||
Sbjct 537 GATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGCTTG 596
Query 670 GTCATGGAGTTTTGTGGTGGTGGTAATCTCTATTCCTTGAGACAGAAGCAACCAAACAAA 729
|| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 597 GTGATGGAGTTTTGTAGTGGTGGAAATCTCTATTCCTTGAGACAGAAGCAACCCAACAAG 656
Query 730 TGTTTCACAGAGGACGCCGCAAGATTCTTTGCTTCTGAAGTGCTATTGGCATTGGAGTAC 789
||||||||||| ||||| ||||| |||||||| || |||||| |||| ||||| ||||||
Sbjct 657 TGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTATTAGCATTAGAGTAC 716
Query 790 TTGCACATGCTCGGAATTGTTTACCGTGACTTGAAGCCAGAAAATGTTCTAG-TCAGAGA 848
|| || ||||||||||| || ||||| || || |||||||| || ||||| | || ||||
Sbjct 717 TTACATATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTTCTGGTTC-GAGA 775
Query 849 CGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAGTCCAAC 908
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 CGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAACCCAAC 835
Query 909 CCTCGTCAAATCATCCTCTGTTCACGCCGCCGGCGGCGGAAGCGGAAGCAGTCGGCCTGT 968
|| |||||||| | | | || | | | ||| |||| | | | ||| |
Sbjct 836 ACTTGTCAAATC-T--T-T---CAA-C-G--G-CGGTGGAACC--A--C---CGGAATC- 875
Query 969 AGGTCTAATCGACGAGGACGCGGCGGTGCAAGGTTGT-ATCCAACCGTCAACATTCTTCC 1027
| | | | |||| | | |||||||| ||||| ||| | |||||| || |||||||||
Sbjct 876 A--T-TGA-CGAC-A--ATGCGGCGGTACAAGGATGTTA-CCAACCATCCGCATTCTTCC 927
Query 1028 CGCGGATTTTACAGTCGTCGAAGAGGAATCGAAAAGCGAAATCGGATTTCGGACTCTTCG 1087
| || || | || || ||||||| || || ||| | ||||| ||||||| | | |
Sbjct 928 CACGAATGCTCCAATCCTCGAAGAAAAACCGTAAATCCAAATCCGATTTCG-A-TG---G 982
Query 1088 TTAACGGATCCATGCCAGAACTCATGGCGGAGCCAACGAACGTCAAATCAATGTCATTCG 1147
| || | | |||||||||||||| ||||| || ||||| ||||||||||| || |
Sbjct 983 AT--CGT-T--A--CCAGAACTCATGGCAGAGCCGACAAACGTGAAATCAATGTCTTTTG 1035
Query 1148 TCGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGTGAAGGACACGGAAGCGCCG 1207
|||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1036 TCGGAACACACGAGTATTTAGCGCCGGAGATTATCAAAAACGAAGGTCACGGAAGCGCCG 1095
Query 1208 TAGATTGGTGGACCTTCGGAATTTTCATCTACGAGCTTCT-CTATGGAGCGACGCCGTTT 1266
| ||||||||||| ||||| || ||||||||||||||||| | ||||||| || || |||
Sbjct 1096 TCGATTGGTGGACGTTCGGGATATTCATCTACGAGCTTCTTC-ATGGAGCAACACCATTT 1154
Query 1267 AAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATCGGACAAGCT-TTAAGATTCCC 1325
||||||||||||||| || |||||| | || || ||||||||| || ||| |||||||
Sbjct 1155 AAAGGACAAGGAAACAAAGCCACGCTTTATAATGTAATCGGACAACCTCTTA-GATTCCC 1213
Query 1326 TGAGG-TTCCTCATGTGAGCTCGGCGGCGAGAG-ATCTCATCAAAGGATTATTAGTTAAA 1383
|| ||| ||| || |||||| |||||| || || | |||||||| ||||| || |||
Sbjct 1214 GGAATATTC-TCAGGTTAGCTCGACGGCGA-AGGATTTGATCAAAGGTTTATTGGTAAAA 1271
Query 1384 GAACCACAAAA-ACGAATCGCTTACAAACGTGGCGCGACGGAGATCAAGCAGCATCCGTT 1442
|| || ||||| | |||| || || || || |||||||||||||||||||| ||||| ||
Sbjct 1272 GAGCCGCAAAACA-GAATTGCGTATAAGCGAGGCGCGACGGAGATCAAGCAACATCCATT 1330
Query 1443 TTTCGAAGGTGTGAATTGGGCGCTGATTCG-GAGTGCAACGCCGCCGCATGTACCAGAAC 1501
||| |||||||||||||||||| ||||||| | | | ||| ||||| ||| | || || |
Sbjct 1331 TTTTGAAGGTGTGAATTGGGCGTTGATTCGTG-GAGAAACACCGCCACATTTGCCGGAGC 1389
Query 1502 CGGTGGATTTTTCGTGTTACGC-AAGCAAGGATAAAGAGTCTATGGCGGCTGTTGACGGC 1560
|||||||||| |||||||| | ||| ||||| || |||||| || || | | | ||||
Sbjct 1390 CGGTGGATTTCTCGTGTTATGTGAAG-AAGGAGAAGGAGTCTTTGCCGCC-G--G-CGGC 1444
Query 1561 GGCGGAAA-GAAGAACAA 1577
|||||| ||||| |||
Sbjct 1445 AACGGAAAAGAAGAGCAA 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5