BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316819

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79260.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Domain of...   689    0.0  


> AT1G79260.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Domain 
of unknown function DUF1794 (InterPro:IPR014878); Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr1:29813244-29814309 FORWARD LENGTH=782
Length=782

 Score =  689 bits (373),  Expect = 0.0
 Identities = 467/510 (92%), Gaps = 15/510 (3%)
 Strand=Plus/Plus

Query  1    ATGAATCAGCTGCAAG-AACTCGAAAACCCACGGCCAAT----TCCGGTGCACCCGTTCG  55
            ||||||||||||| || ||||| |||||||| ||  |||     ||||||||||| || |
Sbjct  39   ATGAATCAGCTGC-AGCAACTCCAAAACCCA-GGGGAATCGCCGCCGGTGCACCCTTTTG  96

Query  56   TAGCGCCGTTGTCGTATCTACTGGGAACTTGGAGAGGACAAGGAGAAGGTGGATATCCAA  115
            |||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||| |
Sbjct  97   TAGCGCCGTTGTCGTATCTATTAGGAACATGGAGAGGACAAGGAGAAGGTGAATATCCTA  156

Query  116  CTATACCTTCTTTCCGATACGGCGAAGAGCTCCGTTTCTCACATTCCGGCAAGCCGGTGA  175
            ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  157  CTATACCGTCTTTCCGCTACGGCGAAGAGATCCGTTTCTCACATTCCGGCAAGCCGGTGA  216

Query  176  TCTCGTATACGCAAAGGACATGGAAATTGGAATCAGGAGCTCCGATGCACGCCGAGAGTG  235
            |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  TAGCGTATACGCAAAAGACATGGAAATTGGAATCAGGAGCTCCGATGCACGCCGAGAGTG  276

Query  236  GTTACTTTCGTCCAA-ATCCAGATGGTTCCATTGAAGTCGTCATTGCTCAGAGCACAGGT  294
            ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  277  GTTACTTTCGTCCAAGA-CCAGATGGTTCTATTGAAGTCGTCATTGCTCAGAGCACAGGT  335

Query  295  CTCGTCGAAGTCCAGAAAGGAACATACAATGTTGATGAACAATCCATCAAACTCAAAAGT  354
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  336  CTCGTCGAAGTCCAGAAAGGAACATACAATGTAGATGAACAATCAATCAAACTCAAAAGT  395

Query  355  GATCTCGTGGGAAACGCATCAAAGGTGAAGGAGATAAGTAGAGAATTTGAATTGGTTAAT  414
            ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  396  GATCTTGTGGGAAACGCTTCAAAGGTGAAGGAGATAAGTAGAGAATTTGAATTGGTTGAT  455

Query  415  GGAAAACTATCGTACGTGGTTCATATGAGTACAACCACCACAAACCCTCTTCTTCAACCA  474
            |||||||||||||| ||||||| ||||||||||||||| | |  ||||||||   |||||
Sbjct  456  GGAAAACTATCGTATGTGGTTCGTATGAGTACAACCACTA-A--CCCTCTTC---AACCA  509

Query  475  CATCTCAAAGCTATTCTCGATAAGCTTTGA  504
            ||||||||||| || |||||||||||||||
Sbjct  510  CATCTCAAAGCAATACTCGATAAGCTTTGA  539



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5