BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316857
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protei... 1216 0.0
AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protei... 989 0.0
> AT1G79650.4 | Symbols: RAD23B | Rad23 UV excision repair protein
family | chr1:29972108-29975281 REVERSE LENGTH=1635
Length=1635
Score = 1216 bits (658), Expect = 0.0
Identities = 706/730 (97%), Gaps = 0/730 (0%)
Strand=Plus/Plus
Query 369 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTGGTTAGTGGCAGTAGTCTTGA 428
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 608 GGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGA 667
Query 429 ACAAATGGTCCAACAGATAATGGAAATGGGAGGCGGAAGTTGGGACAAAGAAACAGTTAC 488
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 668 GCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTAC 727
Query 489 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATCTGTACTCTGG 548
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 728 TCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGG 787
Query 549 AATTCCTGAAACTGCTGAAGTAGCTGTGGCAGTACCTGGGGCTCAGATGGCAGGATCCGG 608
||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 788 AATTCCTCAAACTGCTGAAGTAGCTGTGCCAGTACCTGAGGCTCAGATTGCAGGATCCGG 847
Query 609 TGCAGCCCCTGTCGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCC 668
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TGCAGCCCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCC 907
Query 669 TCAGGAAACAGTTGCTGCTGCTGGCTCTGGTGATCTCGGGACACTTGAATTTCTTAGAAA 728
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 908 TCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAA 967
Query 729 CAATGACCAGTTCCAACAATTACGCACCATGGTCCACTCCAACCCTCAAATTCTTCAGCC 788
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 968 CAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGCC 1027
Query 789 CATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 CATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCA 1087
Query 849 GGCAGAGTTTCTTCAGTTAGTAAACGAGCCCTATGAGGGATCTGACGGGGATGCGGACAT 908
|||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||
Sbjct 1088 GGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGGGGACAT 1147
Query 909 GTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAGCAAGA 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1148 GTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAACAAGA 1207
Query 969 GGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCCTTCCT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1208 AGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCGTTCCT 1267
Query 1029 CGCATGTGACCGTAACGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGAGATTT 1088
|||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1268 CGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGTGACTT 1327
Query 1089 TGAAGACTGA 1098
||||||||||
Sbjct 1328 TGAAGACTGA 1337
Score = 492 bits (266), Expect = 3e-138
Identities = 348/384 (91%), Gaps = 20/384 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTCTACCCTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 150 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTTTACCCTCC 209
Query 61 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAAACAATTATCCA 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 210 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAGACAATTATCCA 269
Query 121 TGTGGCCAACAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTC 180
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TGTGGGCAGCAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTG 329
Query 181 GAGAACAAGGTTACCGAGGAAGGCTTTCTCGTCGTTATGCTTAGCAAGAGCAAAACTGCA 240
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 330 GAGAACAAAGTTACGGAGGAAGGATTTCTCGTCGTTATGCTTAGCAAGAGCAAATCTGGA 389
Query 241 GGTTCAGCTGGTCAGTCTTCGGTTCAG-C--C----G-------GC-T-T--CCGCTACC 282
||||||||||||||| ||||||||||| | | | || | | ||||||||
Sbjct 390 GGTTCAGCTGGTCAGGCTTCGGTTCAGACTTCTTCTGTTTCACAGCCTGTTTCCGCTACC 449
Query 283 ACATCTTCGACTAAGCCTGAAACACCATCTACAACCCAGTCTAT-AGCTGTGCCTGCTTC 341
||||||||||||||||||| | | |||||||||||||||||| | | |||| ||||||||
Sbjct 450 ACATCTTCGACTAAGCCTGCAGCTCCATCTACAACCCAGTCT-TCACCTGTTCCTGCTTC 508
Query 342 ACCTATTCCTGCTCAAGAACAACC 365
||||||||||||||||||||||||
Sbjct 509 ACCTATTCCTGCTCAAGAACAACC 532
> AT1G16190.1 | Symbols: RAD23A | Rad23 UV excision repair protein
family | chr1:5543152-5546103 FORWARD LENGTH=1433
Length=1433
Score = 989 bits (535), Expect = 0.0
Identities = 932/1121 (83%), Gaps = 37/1121 (3%)
Strand=Plus/Plus
Query 1 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTCTACCCTCC 60
||||||||||| ||||| ||||||||||| || |||||||| ||||||||||| ||| ||
Sbjct 116 ATGAAGCTCACTGTTAAGACTCTCAAGGGTAGCCATTTTGAGATTAGGGTTCTTCCCACC 175
Query 61 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAAACAATTATCCA 120
|| |||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||
Sbjct 176 GACACGATAATGGCGGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCT 235
Query 121 TGTGGCCAACAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCC-TGGT 179
||||| || ||||| |||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 236 TGTGGGCAGCAATTACTGATTCACAATGGAAAGGTTTTGAAAGATGAAACTA-CCTTGGT 294
Query 180 CGAGAACAAGGTTACCGAGGAAGGCTTTCTCGTCGTTATGCTTAGCAAGAGCAAAACTGC 239
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 295 GGAGAACAAGGTTACCGAGGAGGGTTTTCTTGTCGTGATGCTTAGCAAGAGCAAAACTGC 354
Query 240 AGGTTCAGCTGGTCAGTCTTCGGTTCAGCCGGC-T-T--C-CG----CTACCACATCTTC 290
| |||||||||||| ||||| |||||| | | | | || |||||| ||||||
Sbjct 355 AAGTTCAGCTGGTCCCTCTTCTACTCAGCCTACTTCTACCACGACATCTACCATATCTTC 414
Query 291 GACTAAGCCTGAAACACCATCTACAACCCAGTCTATAGCTGTGCCTGCTTC--A-CCTAT 347
|| | || || | | || || |||||||||||||| |||||||| ||||| | |||
Sbjct 415 AACCACGCTTGCAGCTCCGTCGACAACCCAGTCTATTGCTGTGCCGGCTTCAAATTCTAC 474
Query 348 TCCTGCTCAAGAACAACCTGCGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATT 407
||| | |||||||||||| ||||||| | |||||||||||| |||||||| ||||| ||
Sbjct 475 TCCCGTTCAAGAACAACCAACGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTT 534
Query 408 GGTTAGTGGCAGTAGTCTTGAACAAATGGTCCAACAGATAATGGAAATGGGAGGCGGAAG 467
||||||||||||||| |||| |||||||| ||||| ||||||||||||||||| || ||
Sbjct 535 AGTTAGTGGCAGTAGTATTGAGCAAATGGTTCAACAAATAATGGAAATGGGAGGAGGCAG 594
Query 468 TTGGGACAAAGAAACAGTTACTCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGC 527
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 TTGGGACAAAGAAACGGTTACTCGTGCACTTCGTGCAGCATATAACAACCCTGAGAGAGC 654
Query 528 AGTGGATTATCTGTACTCTGGAATTCCTGAAACTGCTGAAGTAGCTGTGGCAGTACCTGG 587
|||||||||||| || ||||||||||||||||| | | || | | | ||| | ||
Sbjct 655 AGTGGATTATCTATATTCTGGAATTCCTGAAACAG-T-AACCA--T-TC-CAGCAACTAA 708
Query 588 GGC-TCAG-ATGGCAGGATCCGGT-GCAGCCC---CTG-TCGCACCTGCATCTGGAGGAC 640
|| | | | |||||| ||| | || | ||| || | ||| | |||||||| |
Sbjct 709 TTTATCTGGA-GT-AGGATCTGGTAG-AGAACTTACTGCTC-CTCCTCCCTCTGGAGGCC 764
Query 641 CTAACTCATCTCCTTTGGATTTATTTCCTCAGGAAACAGTTGCTGCTGCTGGCTC-TGGT 699
|||| ||||||||| ||||||| ||||| |||||| ||||| ||| ||| | | |||
Sbjct 765 CTAATTCATCTCCTCTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCAG-CAGGTGGA 823
Query 700 GATCTCGGGACACTTGAATTTCTTAGAAACAATGACCAGTTCCAACAATTACGCACCATG 759
||||| || || |||||||| || ||| |||||| |||||||||||||||||| |||||
Sbjct 824 GATCTTGGAACGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATG 883
Query 760 GTCCACTCCAACCCTCAAATTCTTCAGCCCATGCTTCAGGAACTTGGAAAGCAAAACCCT 819
||| | |||||||| || ||||| ||||| |||||||| || || |||||||| |||||
Sbjct 884 GTCAATTCCAACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAGCAGAACCCC 943
Query 820 CAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAACGAGCCC 879
||||||||||||||||||||||| ||||| || || |||||||||||| |||||||||||
Sbjct 944 CAACTTCTGAGGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCC 1003
Query 880 TATGAGGGATCTGACGGGGATGCGGACATGTTCGATCAACCCGAGCAAGAAATGCCACA- 938
|| || |||||||||||||||| ||| || ||||||||||| || ||||||||||| ||
Sbjct 1004 TACGAAGGATCTGACGGGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCAC 1063
Query 939 TGCCATT-AACGTTACCCCAGCAGAGCAAGAGGCGATTCAACGGCTCGAGGCAATGGGAT 997
| | | | ||||||||||| | ||||||||| | ||| ||||||| ||||||||||| |
Sbjct 1064 T-C-AGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGGCTTGAGGCAATGGGGT 1121
Query 998 TTGATAGAGCCTTAGTAATAGAAGCCTTCCTCGCATGTGACCGTAACGAAGAATTGGCAG 1057
|||||||||| |||| |||||||||||||| | |||||||||||||| |||||||| |
Sbjct 1122 TTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTG 1181
Query 1058 CTAACTATCTATTGGAGAACTCAGGAGATTTTGAAGACTGA 1098
| ||||||||| | ||| |||||| ||||||||||||||||
Sbjct 1182 CAAACTATCTACTAGAGCACTCAGCAGATTTTGAAGACTGA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5