BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316895

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80650.1 | Symbols: RTL1 | RNAse THREE-like protein 1 | chr1...   555    2e-157


> AT1G80650.1 | Symbols: RTL1 | RNAse THREE-like protein 1 | chr1:30314536-30315819 
FORWARD LENGTH=889
Length=889

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 373/406 (92%), Gaps = 14/406 (3%)
 Strand=Plus/Plus

Query  133  GAAGAAGAAGACAATGCTATTTCTTCCTTCTCTAACATTCAGATTGATCCTAACAGCACA  192
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  248  GAAGAAGAAGACAATGCCATTTCTTCCTTCTCTAACATTCAAATTGATCCTAACAGCACA  307

Query  193  AGAAGCATTACACAAGAGAATAAGCTTGTTCCTAAACC--A-GAAG-A-AGA-CGCCACC  246
            ||||||||| ||| |||||| ||||||| |||||||||  | |||| | | | | |||||
Sbjct  308  AGAAGCATTTCACTAGAGAAGAAGCTTGCTCCTAAACCAGATGAAGAACACACCACCACC  367

Query  247  ACCAAACCCAAT-TCTAAAGGTGACGAATCTAAG---A-GAG-GG-TCAGCAAAATCGGT  299
            ||||||||| || ||||||| ||| |||||||||   | ||| || ||||| ||||||||
Sbjct  368  ACCAAACCC-ATATCTAAAGATGATGAATCTAAGACTAGGAGAGGCTCAGCTAAATCGGT  426

Query  300  GTTACACGAAATATGTGCTTCCAAGCGTTGGAGACCTCCGGTTTATGAATGCTGCAAAGT  359
            |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  427  GTTACACGAAATGTGTGCTTCCAAGCGTTGGAGACCTCCTGTTTATGAATGCTGCAATGT  486

Query  360  TGATGGACCTTGCCATTTGAGATTATTTACATACAAAGTTGTGGTTGAGATTATAGAGTC  419
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct  487  TGATGGACCTTGCCATTTGAGATTATTTACATACAAAGTTATGGTTGAGATTAGAGATTC  546

Query  420  TTCAGGGAAAACTGTTTTGGAGTGTTTTGGGGATCCCAGACGCAACAAGAAAGCTGCTGC  479
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  547  TTCAGGGAAAACTGTTTTGGAGTGTTTTGGGGATCCCAGACGCAAAAAGAAAGCTGCTGC  606

Query  480  TGAGCATGCAGCAGAAGGAGCGCTTTGGTATCTTGAGCATGTAAAG  525
            |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  607  TGAGCATGCAGCAGAAGGAGCGCTTTGGTATCTTGAGCATGTGAAG  652



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5