BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316898
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80620.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:3... 730 0.0
> AT1G80620.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:30305362-30307417
FORWARD LENGTH=1522
Length=1522
Score = 730 bits (395), Expect = 0.0
Identities = 717/861 (83%), Gaps = 67/861 (8%)
Strand=Plus/Plus
Query 1 ATGGCGCTTCATCTCGCCAGACCTAAACAAAGGTTACATTCTAATCCATCTCTCATTCAT 60
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 43 ATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATTCGAATCCATCTCTCATTCAC 102
Query 61 CTTTTCTCAACCTCCTCATCAT-CTCCTCAAGACGGCAACGAATCTAG-CGAGCAGC-CC 117
||||||||||||||||| || | |||||| | | | || || || || | | |
Sbjct 103 CTTTTCTCAACCTCCTCCTCCTCCTCCTC-A-TCATC-AC--CTCAAGACG-GGAACGAA 156
Query 118 TCTCAAT-CACCGTCTTCTTCATCTTCATCGCCGCCAGATTTTAAAATATCTTCCTACTT 176
||| ||| || | | || ||| |||||| || |||| |||||| |||||||||||
Sbjct 157 TCT-AATGAACAGCCCTC-TCA--ATCATCGTCG---GATTATAAAATCTCTTCCTACTT 209
Query 177 CAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGCCTCAGGACGGGAGGAGACAGTTCGT 236
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 210 CAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGTCTCAGGACGGGAAGAGACAGTTCGT 269
Query 237 CAGATTCGATGCTAAAGCTCCGAATCCGGCGACGTCGCTCTCCGGTAATCAGGATATCAG 296
|||||||||||| ||| ||| |||| ||||| |||||||| |||||||||||
Sbjct 270 CAGATTCGATGCCAAACCTCAGAAT---------TCGCTTTCCGGTAACCAGGATATCAG 320
Query 297 GAGAAATCTGAACGAGTTCCGAAGTAGAGCAGTAGCTCCGCCGCCGAGGGAT-TGGCAGG 355
||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 321 GAGGAATCTGAACGAGTTCCGAAGTAGAGCAACAGCTCCGCCGCCGAGGGATAT-GCAGG 379
Query 356 ATATATACAAACAGAATGTATTACCAAAATC-GG-GAGATTCGTATGGGACTCGTAA--A 411
|| | | ||| |||||||| ||| ||||||| || | || ||||| || ||| ||
Sbjct 380 ATCTTTTCAAGCAGAATGTGTTATCAAAATCTGGAGGGACTCGTA---GAATCG-AAGGT 435
Query 412 AT-CGATGGAACAAACATAACGGAGAACTTAAGGCAGATGAGA--TC-ACAAGCTAA-CA 466
| | || ||||||||||| || ||||||||||||||||||| | |||||| || ||
Sbjct 436 GTGCCAT-TAACAAACATAAAGGCGAACTTAAGGCAGATGAGACCACAACAAGC-AACCA 493
Query 467 CAGAGAGCAAATGGGCCAATTTATCTGGG-TTACAGAACACTATGAAGACGAATTTGAAA 525
| ||||||||||||||||||||||||||| || ||||||| |||||||||| | | |
Sbjct 494 CTGAGAGCAAATGGGCCAATTTATCTGGGATT-CAGAACATTATGAAGACG-A----ACA 547
Query 526 TTCAATGAAAATCTCCGGTCAAATGTAATCGGAGGAG--G-AGAAGGATTGCCATATTCA 582
||||||| ||| |||| ||||||||||||||||||| | ||||||||||||| |||||
Sbjct 548 -TCAATGATAATATCCGTTCAAATGTAATCGGAGGAGCAGCAGAAGGATTGCCACATTCA 606
Query 583 GTGTTTGAGAAGGAATTAGAACAAGGGCAGAAGAATGAAAATGAGACAGAGGAGATGAAA 642
||| ||| |||||| |||||| || | ||| | || | | ||| ||||||||||||
Sbjct 607 GTGGTTGGGAAGGAGTTAGAAGAA--GAAGATG--TG-ACA-GAG---GAGGAGATGAAA 657
Query 643 TCAGAGTTTATCAAGAGTTATGATCCAATAGAATTGGGAGAGAAACTAAGATTGTATAGA 702
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 TCAGAGTTTATCAAGAGCTATGATCCAATAGAACTGGGAGAGAAACTAAGATTGTATAGG 717
Query 703 CCAGAGGGAAAGAAAGAACTAGGTTGGTTCTCATTACATGAGCTCAATCAGAGGCTTGTT 762
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 718 CCTGAGGGAAAGAAAGAAGAAGGTTGGTTCTCATTACAGGAGCTCAATCAGAGGCTTGTT 777
Query 763 AAGCTCAGGGCCATGGAAGAGGAACAATTCGAGAGAACGAGGACA-TCGAATCCCTCCTT 821
|||||||||||||||||||||||||||||| ||| |||||| | | | | ||||||||||
Sbjct 778 AAGCTCAGGGCCATGGAAGAGGAACAATTCCAGAAAACGAGTATAGT-GCATCCCTCCTT 836
Query 822 CGTTGAGGAA-TTGAGGTCTG 841
||| | || ||||||||||
Sbjct 837 CGTCAAC-AACTTGAGGTCTG 856
Score = 601 bits (325), Expect = 6e-171
Identities = 341/349 (98%), Gaps = 0/349 (0%)
Strand=Plus/Plus
Query 892 AAGTATATGCTCGAGCCTCCGAAAGATCAACTAGTTGAAACTTATTTCCACCCGGATAAC 951
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 937 AAGTATATGCTCGAGCCTCCAAAAGATCAACTAGTTGAAACTTATTTCCATCCGGATAAC 996
Query 952 ATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATG 1056
Query 1012 TCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCACAACTGACCACTAAGATCAAG 1071
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1057 TCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAACTGACCACTAAGATCAAG 1116
Query 1072 CATCTATCCTCGGTTCTACACAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATG 1131
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATG 1176
Query 1132 GTGCAGAGACGGAAGAAACTGTTGAAGTATATGAGACGAACGGATTGGGATTCTTACTGC 1191
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1177 GTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACGGACTGGGATTCTTACTGC 1236
Query 1192 CTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCAGATTACAAGTTTT 1240
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1237 CTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTACAAGTTTT 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5