BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316902
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80580.1 | Symbols: | Integrase-type DNA-binding superfamil... 874 0.0
> AT1G80580.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:30293558-30294328 FORWARD LENGTH=771
Length=771
Score = 874 bits (473), Expect = 0.0
Identities = 667/756 (88%), Gaps = 32/756 (4%)
Strand=Plus/Plus
Query 8 ACACCGTTGATGGTCACCGTCTCCAATATTCCGTTCCTTTAAGCTCCATGCATGAAACCC 67
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 14 ACACCGTTGATGGTCACCGTCTTCAATATTCCGTTCCGTTAAGCTCCATGCATGAAACCA 73
Query 68 GTCAAAGCTTCGAAACTTACGGGTTATCCAAAGAGACGCCGTTAGTCTGCATGCCCTTCT 127
|||||| || |||||||||||| |||||||||||| ||||||| |||||||||||||| |
Sbjct 74 GTCAAAACTCCGAAACTTACGGATTATCCAAAGAGTCGCCGTTGGTCTGCATGCCCTTGT 133
Query 128 TCGAAACCAACACTTCTTCATTCGGTATTTCTTCTCTTTTCTC-TTCTAACCCAAAACCA 186
|||||||||||||| ||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 134 TCGAAACCAACACTACTTCATTCGATATCTCTTCTCTTTTCTCGTT-TAACCCAAAACCA 192
Query 187 GAACCCGAAAACACGCCTAGGGTCATGGACGATTCCATCGCCGCCGTGGTAGGCGAAAAT 246
|||||||||||||||| | | |||||||||||||||||||||||||| || ||||||||
Sbjct 193 GAACCCGAAAACACGCATCGTGTCATGGACGATTCCATCGCCGCCGTCGTGGGCGAAAAC 252
Query 247 GTTCTTTTCGGTGATAACAACAAAGTCTCTGATCACTTTCCCGCGACGGAGACCACAGGA 306
||||||||||||||||| |||||||||||||||||||| | || | | | | |
Sbjct 253 GTTCTTTTCGGTGATAAAAACAAAGTCTCTGATCACTT----G--ACC-A-A--AGA--A 300
Query 307 GGTGGTGTGAAGCGGGGGCGCAAGATGCCGCAGAAGAACGGAGGATTTATGGGAGTGAGA 366
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 301 GGTGGTGTGAAGCGGGGGCGGAAGATGCCGCAGAAGACCGGAGGATTCATGGGAGTGAGA 360
Query 367 AAACGACCTTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACAC 426
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAACGGCCGTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACAC 420
Query 427 TGGTTAGGAACGTTCGACACGGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCGGCGAGA 486
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 421 TGGTTAGGAACGTTCGACACGGCGGAAGAGGCAGCGCGTGCGTATGACGCGGCGGCGAGG 480
Query 487 AGGCTTAGAGGGACGAAAGCCAAGACCAACTTCGTGATTCCTCCGGTTTT-CCCGGAGGA 545
|||||||||||||| |||||||||||||| ||||||||||||||| |||| ||| ||||
Sbjct 481 AGGCTTAGAGGGACCAAAGCCAAGACCAATTTCGTGATTCCTCCGCTTTTTCCCA-AGGA 539
Query 546 AATAGCTCTGGTTCAGTCGTCTACA-ACGGA--AG--AGAAT-AGGAGGAGGAGGAAGAA 599
|||||||| || |||| | || | | ||| || |||| || || || || |||||
Sbjct 540 AATAGCTCAGGCTCAGGAGGATA-ATA-GGATGAGGCAGAAGCAGAAGAAGAAG-AAGAA 596
Query 600 GAAAAG-GTTGAATGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAATTGTTC-AGT 657
||||| || || |||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 597 GAAAAAAGT-GAGTGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAGTTGTTCGA-T 654
Query 658 AATACCAATACC-TCAAGTTCTTCTAGTAGTAATGTAAATGTGGTTACTTCTATTGATAA 716
|| ||||| | || ||||||||||| ||| | ||||||| ||| ||||||||||||
Sbjct 655 GATGCCAATTTTATAAA-TTCTTCTAGTATTAAAGGAAATGTGATTAGTTCTATTGATAA 713
Query 717 TCTTGAAAAAATGGGTCTAGAGCTTGATTTGAAGTT 752
|||||||||||||||||||||||||||||||| |||
Sbjct 714 TCTTGAAAAAATGGGTCTAGAGCTTGATTTGA-GTT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5