BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316902 Length=777 Score E Sequences producing significant alignments: (Bits) Value AT1G80580.1 | Symbols: | Integrase-type DNA-binding superfamil... 874 0.0 > AT1G80580.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:30293558-30294328 FORWARD LENGTH=771 Length=771 Score = 874 bits (473), Expect = 0.0 Identities = 667/756 (88%), Gaps = 32/756 (4%) Strand=Plus/Plus Query 8 ACACCGTTGATGGTCACCGTCTCCAATATTCCGTTCCTTTAAGCTCCATGCATGAAACCC 67 |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 14 ACACCGTTGATGGTCACCGTCTTCAATATTCCGTTCCGTTAAGCTCCATGCATGAAACCA 73 Query 68 GTCAAAGCTTCGAAACTTACGGGTTATCCAAAGAGACGCCGTTAGTCTGCATGCCCTTCT 127 |||||| || |||||||||||| |||||||||||| ||||||| |||||||||||||| | Sbjct 74 GTCAAAACTCCGAAACTTACGGATTATCCAAAGAGTCGCCGTTGGTCTGCATGCCCTTGT 133 Query 128 TCGAAACCAACACTTCTTCATTCGGTATTTCTTCTCTTTTCTC-TTCTAACCCAAAACCA 186 |||||||||||||| ||||||||| ||| |||||||||||||| || ||||||||||||| Sbjct 134 TCGAAACCAACACTACTTCATTCGATATCTCTTCTCTTTTCTCGTT-TAACCCAAAACCA 192 Query 187 GAACCCGAAAACACGCCTAGGGTCATGGACGATTCCATCGCCGCCGTGGTAGGCGAAAAT 246 |||||||||||||||| | | |||||||||||||||||||||||||| || |||||||| Sbjct 193 GAACCCGAAAACACGCATCGTGTCATGGACGATTCCATCGCCGCCGTCGTGGGCGAAAAC 252 Query 247 GTTCTTTTCGGTGATAACAACAAAGTCTCTGATCACTTTCCCGCGACGGAGACCACAGGA 306 ||||||||||||||||| |||||||||||||||||||| | || | | | | | Sbjct 253 GTTCTTTTCGGTGATAAAAACAAAGTCTCTGATCACTT----G--ACC-A-A--AGA--A 300 Query 307 GGTGGTGTGAAGCGGGGGCGCAAGATGCCGCAGAAGAACGGAGGATTTATGGGAGTGAGA 366 |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| Sbjct 301 GGTGGTGTGAAGCGGGGGCGGAAGATGCCGCAGAAGACCGGAGGATTCATGGGAGTGAGA 360 Query 367 AAACGACCTTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACAC 426 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAACGGCCGTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACAC 420 Query 427 TGGTTAGGAACGTTCGACACGGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCGGCGAGA 486 |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 421 TGGTTAGGAACGTTCGACACGGCGGAAGAGGCAGCGCGTGCGTATGACGCGGCGGCGAGG 480 Query 487 AGGCTTAGAGGGACGAAAGCCAAGACCAACTTCGTGATTCCTCCGGTTTT-CCCGGAGGA 545 |||||||||||||| |||||||||||||| ||||||||||||||| |||| ||| |||| Sbjct 481 AGGCTTAGAGGGACCAAAGCCAAGACCAATTTCGTGATTCCTCCGCTTTTTCCCA-AGGA 539 Query 546 AATAGCTCTGGTTCAGTCGTCTACA-ACGGA--AG--AGAAT-AGGAGGAGGAGGAAGAA 599 |||||||| || |||| | || | | ||| || |||| || || || || ||||| Sbjct 540 AATAGCTCAGGCTCAGGAGGATA-ATA-GGATGAGGCAGAAGCAGAAGAAGAAG-AAGAA 596 Query 600 GAAAAG-GTTGAATGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAATTGTTC-AGT 657 ||||| || || |||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 597 GAAAAAAGT-GAGTGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAGTTGTTCGA-T 654 Query 658 AATACCAATACC-TCAAGTTCTTCTAGTAGTAATGTAAATGTGGTTACTTCTATTGATAA 716 || ||||| | || ||||||||||| ||| | ||||||| ||| |||||||||||| Sbjct 655 GATGCCAATTTTATAAA-TTCTTCTAGTATTAAAGGAAATGTGATTAGTTCTATTGATAA 713 Query 717 TCTTGAAAAAATGGGTCTAGAGCTTGATTTGAAGTT 752 |||||||||||||||||||||||||||||||| ||| Sbjct 714 TCTTGAAAAAATGGGTCTAGAGCTTGATTTGA-GTT 748 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37776078544 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5