BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316907
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1110 0.0
> AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1);
Has 175 Blast hits to 171 proteins in 20 species: Archae -
0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 171; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:30281638-30284319
REVERSE LENGTH=1678
Length=1678
Score = 1110 bits (601), Expect = 0.0
Identities = 655/682 (96%), Gaps = 0/682 (0%)
Strand=Plus/Plus
Query 708 TGTGGTTGCGGACACGTGTATGGCTATGGACCAATGGGTGCATGACCCAGCGGCAGACTC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TGTGGTTGCGGACACGTGTATGGCTATGGACCAATGGGTGCATGACCCAGCGGCAGACTC 1056
Query 768 AGCATTGAGCCAACTTCTTCCATGTTTAGATGCTAAAACCATTGGAGAGACATTGGATAT 827
||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1057 AGCATTGAGTCAACTTCTTCCGTGTTTAGATCCTAAAACCATTGGAGAGACATTGGATAT 1116
Query 828 AACGAAGACGATGACTGCTACGGCCGTCGACATGACCAATGCGTACACGGTCAATGTCAG 887
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1117 AACGAAGACGATGACTGCGACGGCCGTTGACATGACCAATGCGTACACGGTCAATGTCAG 1176
Query 888 CAACCATGATCAGTTCCCACCTAATGTCCCTTTCTACCACAACCAGTCTGGTCCGCTTGT 947
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1177 TAACCATGATCAGTTCCCACCTAATGCCCCTTTCTACCACAACCAGTCTGGTCCGCTCGT 1236
Query 948 TCCTCTCCTCTGTAACCCACTCGACCAAAATCACAACCCGCGACCTTGTGCTCCGGACGA 1007
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1237 TCCTCTTCTCTGTAACCCACTCGACCAAAATCACAAACCGCGGCCTTGTGCTCCCGACGA 1296
Query 1008 AGTCCTATTAGCCAATGCTTCTCAGGTTTATAAAGGCTATGTGTGCCAAGTGAACGCAGA 1067
|||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1297 AGTCCTCTTAGCCAATGCTTCTCAGGTTTATAAAGGCTATATTTGCCAAGTGAACGCAGA 1356
Query 1068 AGGAATCTGCACAACGCAGGGGAGGTTAACCCCAGCTTCATACGACCAGATGATGGGTGC 1127
|||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct 1357 AGGAATCTGCACAACGCAGGGGAGGTTAACACAAGGTTCGTACGACCAGATGATGGGTGC 1416
Query 1128 GATCAACGTGGCGTTCACGTTGGACCATTATGGTCCCTTCTTGGCTAGTATTGCGGACTG 1187
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1417 GATCAACGTGGCGTTCACGTTGGACCATTATGGTCCCTTCTTAGCTAGTATTGCGGACTG 1476
Query 1188 TACTTTCGTCAGAGACACCTTCAGAGACATAACCACCAAGAACTGCCCTGGACTCAGCAT 1247
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1477 TACATTCGTTAGAGACACCTTCAGAGACATAACCACCAAGAACTGCCCTGGACTTAGCAT 1536
Query 1248 TACCAGTCAGTGGATCTACGCAGGACTTGCGTCACTCTCTGGTGCAGTCATGTTCTCACT 1307
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1537 TACAAGTCAGTGGATCTACGCAGGACTCGCGTCGCTCTCTGGTGCAGTCATGTTCTCACT 1596
Query 1308 CATCTTCTGGTTGATTTTTGTCAGGGAAAGACGTCACCGATCTCAAACCAAAAAGTCTAT 1367
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 CATCTTCTGGTTGATTTTCGTCAGGGAAAGACGTCACCGATCTCAAACCAAAAAGTCTAT 1656
Query 1368 GATCCAGATGAATAGATTTTAA 1389
||||||||||||||||||||||
Sbjct 1657 GATCCAGATGAATAGATTTTAA 1678
Score = 643 bits (348), Expect = 0.0
Identities = 374/387 (97%), Gaps = 0/387 (0%)
Strand=Plus/Plus
Query 321 GATTGGGTCTGCAATGCTGTACACTGGGCAAAACGAGTTCTACGGTAGCGTGGAGAGGAC 380
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 GATTGGGTCTGCAATGCTGTACACGGGGCAAAACGAGTTCTACGGTAGCGTGGAGAGGAC 597
Query 381 GTTTATGTACATTGTGAAACAAGCAACTGGGGTTTTGACTAAGCTAACGAGCTTATGGGA 440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 GTTTATGTACATTGTGAAACAAGCAACTGGAGTTTTGACTAAGCTAACGAGCTTATGGGA 657
Query 441 CTCAATTCAATCTGCTAAAGACATTCAGCTCGATGGACATAACCTGTTTCCTCCCGAGTT 500
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 CTCGATTCAATCTGCTAAAGACATTCAGCTCGATGGACACAACCTGTTTCCTCCCGAGTT 717
Query 501 TAGAGGTAACATCGATCATTTCAACAACATGATCAAGATGTCTAACATCACTTACCCCGA 560
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TAGAGGCAACATCGATCATTTCAACAACATGATCAAGATGTCTAACATCACTTACCCCGA 777
Query 561 TCGTGTCGCTAACCAGACTATTCGTTACCTCACCGGAGCACTAAACCCTGTGAGATACGT 620
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 778 CCGTGTCGCTAACCAGACAATCCGTTATCTCACCGGAGCACTAAACCCTGTGAGATATGT 837
Query 621 GTTAAATGTGATCGCTGGTGTTATGCTCGCAGTCGCATTCCTCGGCCTCTTGTTTTCGTT 680
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 838 GTTAAATGTGATCGCTGGTGTAATGCTCGCAGTCGCATTCCTCGGCCTTTTGTTTTCGTT 897
Query 681 CTGTGGACTGCGAGTTCTTGTCTACCT 707
||||||| |||||||||||||||||||
Sbjct 898 CTGTGGATTGCGAGTTCTTGTCTACCT 924
Score = 396 bits (214), Expect = 3e-109
Identities = 265/289 (92%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 1 ATGATTTATACCGAAACGCCGTCGTATCATGGTCGCCGGCGTCTCCTCCTGGTCGCCGTT 60
||| || ||| |||||||||||| |||||| |||||||||||||||||||| || |||||
Sbjct 62 ATGGTTAATAGCGAAACGCCGTCATATCATAGTCGCCGGCGTCTCCTCCTGATCACCGTT 121
Query 61 GGACTTTTGATCTCGTCGAGCTTGGTTTCTTTCTCTCATGGAGTTTCTTCTTCTTGTCAT 120
|| ||| ||||| ||||||| ||||||||||| ||||||| |||||| ||||||||||||
Sbjct 122 GGGCTTCTGATCACGTCGAGTTTGGTTTCTTTTTCTCATGCAGTTTCGTCTTCTTGTCAT 181
Query 121 CATCGTCCATCCTCTACCTCATTTCAAGGAGTAAGGAGACAAATTTTGGAAGGAGGGAAT 180
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 182 CATCGTCCATCCTCTACCTCATTTCAAGGAGTGAGGAGGCAAATTTTGGAAGGAGGGAAT 241
Query 181 GGGAC-A--TTGGTGTTAGCGGCGGAGAGGACACGGCGGCCTGACCCTCTCAACCATTTC 237
||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 242 GGGACCAGATTGGTGTTAGCGGCGGAGAGGACACAGCGACCTGACCCTCTCAACCATTTC 301
Query 238 AATATTTACGTCGATGGTTGGAACGTTACCAA-TACTCATTACATCGCC 285
|||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 302 AATATTTATGTCGATGGTTGGAACGTTACCAACT-CTCATTACATCGCC 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5