BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316920
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80400.1 | Symbols: | RING/U-box superfamily protein | chr1... 1485 0.0
> AT1G80400.1 | Symbols: | RING/U-box superfamily protein | chr1:30225176-30227575
FORWARD LENGTH=1747
Length=1747
Score = 1485 bits (804), Expect = 0.0
Identities = 1111/1248 (89%), Gaps = 66/1248 (5%)
Strand=Plus/Plus
Query 1 ATGGATGTTTCTTCCATTGCGCG--A-ACAAGCCTAACTGATCAACATCCTTTGTTAATG 57
||||||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||||
Sbjct 309 ATGGATGTTTCTTCCATTGTGCGAAATACAACCCTAACTGATCAAGATCCTTTGTTAATG 368
Query 58 GACCACCATACCCGCAATAACCGCGACCACATCGTTGACATTACAATG-AGCAACGACCA 116
| ||| | || ||||||||| ||||||||||||||||||| | | |||| |
Sbjct 369 G---ACC--A--CG--GTAACCGCGAGCACATCGTTGACATTACAA-GCAATGACGAGGA 418
Query 117 GGA--C-TC-T-----TCTTCTATCGATGAGCTCACTCCTC-------CT--CATCAAGC 158
||| | || | |||||| |||||||||| ||||||| || |||||||
Sbjct 419 GGACTCTTCATCAAGATCTTCTCTCGATGAGCTTACTCCTCAAGGTAACTCACATCAAGG 478
Query 159 TGAAGAGGAGA-CAGTATCATCATCAACTG-T---------TA--CAGCGCATCCAGCTC 205
|||||| || | | |||||||||||| || | | || | |||||| |||
Sbjct 479 TGAAGA-GACAGTATTATCATCATCAAATGCTACACAACAACACCCAACTCATCCATCTC 537
Query 206 CTCCTCAGCAAAGACCAACTTCTTCTAGGA-A--TGCTCGCCGTACT--AC-TAGTACTA 259
|||||||||||||||||||||||||||||| | | | | | | | | ||||||
Sbjct 538 CTCCTCAGCAAAGACCAACTTCTTCTAGGAGAGGAGATAACGGGAATGGTCGCCGTACTA 597
Query 260 GGAGTCCACTGAATTCCGGCCTTTGGATCTCAGTTGAGTTAGTTGTCACTGTCGCTCAGA 319
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 GGAGTCCATTGAATTCTGGCCTCTGGATCTCAGTTGAGTTAGTTGTCACTGTCGCTCAGA 657
Query 320 TTGTTGCAGCCATTGTAGTTATGGTTCTCGCTAAAGATGAACATCCCGAAGCGCCATTAT 379
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 658 TTGTTGCAGCCATTGTAGTTATGGTTCTGGCTAAAGATGAACATCCTGAAGCGCCATTAT 717
Query 380 TTACTTGGGTTATTGGTTATACTTCTGGCTGTATAGCCACTCTCCCTATTCTCTATTGGC 439
|||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 718 TTACTTGGGTTATTGGATATACTTGTGGCTGTCTAGCCACTCTCCCTATTCTCTATTGGC 777
Query 440 GTTTTCGCACTTATAGTCGAGGTGCAGGACAAGATTCTTCACAACGTCTCAGTAGCTCTT 499
||||||||||||||| ||||| | |||| ||||| |||||||||||| | || |||||
Sbjct 778 GTTTTCGCACTTATAATCGAGCTACAGGGCAAGACTCTTCACAACGT-GC--TACCTCTT 834
Query 500 CTCTAGCCAATAATAACCCTTCAGAGTCCGCACCATATACAGCCGTCTCAGTTGCTCAAG 559
||| || | ||| | | |||||| ||||||||||||| ||||||||||||||||
Sbjct 835 CTCAAGGC---AAT-A---GT--GAGTCCACACCATATACAGCAGTCTCAGTTGCTCAAG 885
Query 560 CAGCAGATGAAGAAAATAGCACCGACATGAGTGCAGCACCTAGAAACAATCAAGTTGGTG 619
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |
Sbjct 886 CAGCAGATGAAGAAAATAGCACTGGCGTGAGTGCAGCACCTAGAAACAATCAAGTTGGGG 945
Query 620 AAACCTTAAGAACAAGGCTCAACGGGCTGGTGGACCACTTCAAGATGGCCATTGATTGTT 679
||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 946 AAAGCTTAAGAACAAGGCTCAACGGGCTAGTGGACCACTTCAAGATGGCGATTGATTGTT 1005
Query 680 TCTTTGCGGTGTGGTTTGTTGTGGGGAATGTATGGATATTTGGAGGTCACTCATCTCCTT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TCTTTGCGGTGTGGTTTGTTGTGGGGAATGTATGGATATTTGGAGGTCACTCATCTCCTT 1065
Query 740 CTGATTCTCCTAAACTGTACAGGTTATGCATAGCGTTCCTAACTTTCAGTTGCATTGGAT 799
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1066 CTGATTCTCCTAAACTGTACAGGTTATGCATAGCGTTCCTTACTTTCAGTTGCATTGGAT 1125
Query 800 ATGCAATGCCATTCATACTATGTGCAACCATATGTTGTTGTCTGCCTTGCTTAATCTCTG 859
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1126 ATGCAATGCCATTCATACTATGTGCAACCATATGTTGTTGTTTGCCTTGCTTAATCTCGG 1185
Query 860 TTCTCGGATTTCGAGAAAACTTCTCACAAACTAGAGGAGCCACTACCGAGGCCATCAACG 919
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1186 TTCTCGGATTTCGAGAGAACTTCTCACAAACTAGAGGAGCCACTGCCGAGGCCATCAACG 1245
Query 920 CACTGCCTGTCTACAGGTTCAAATCAAAAAGTAGAAATGATTTGGAATTTTCAGAAGAAG 979
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1246 CATTGCCTGTCTACAGGTTCAAATCAAAAAGTAGAAATGATTTGGAGTTTTCAGAAGAAG 1305
Query 980 GTGAAGGTGGATTTCTTCTCTTGGGATCTCAGAAGAAACGTCTTATATCAGGCGAGGATG 1039
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1306 GTGAAGGTGGATTTCTTCTCTTGGGGTCTCAGAAGAAACGTCTTATATCAGGCGAGGATG 1365
Query 1040 CCAGCTGTTGCATCTGCTTGACTAGATATGGAGACGATGAACAAGTTAGAGAGCTTCCAT 1099
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1366 CCAGCTGTTGCATCTGCTTGACTAGATATGGAGACGACGAACAAGTTAGAGAGCTGCCAT 1425
Query 1100 GCTCGCATGTCTTCCATGTAGACTGTGTAGACAAATGGCTAAAAATCAATGCGACTTGCC 1159
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1426 GCTCACATGTCTTCCATGTAGACTGTGTAGACAAATGGCTTAAAATCAATGCGACTTGCC 1485
Query 1160 CTCTCTGTAAAAATGAGGTTGGAGAAAGCAGC-GTTGCTTCCTCATAG 1206
||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 1486 CTCTCTGCAAAAATGAGGTTGGAGAAAGCAGCAGT-GCTTCCTCATAG 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5