BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316923 Length=1380 Score E Sequences producing significant alignments: (Bits) Value AT1G80370.1 | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30213705-30... 1995 0.0 AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5362009-536... 837 0.0 > AT1G80370.1 | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30213705-30216861 FORWARD LENGTH=1588 Length=1588 Score = 1995 bits (1080), Expect = 0.0 Identities = 1307/1408 (93%), Gaps = 50/1408 (4%) Strand=Plus/Plus Query 1 ATGGGGAAGGAGAATGCTGTTTCTGGAAACACTGTACCAATCCATGGTCGCCCTGTAACT 60 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 203 ATGGGGAAGGAGAATGCTGTTTCTGGAAACTCTATACCAATCCATGGTCGCCCTGTAACT 262 Query 61 CGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTCAAGTGGCT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 263 CGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTGAAGTGGCT 322 Query 121 GCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 GCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGAT 382 Query 181 GAGAAGAAAGCTAATGCACCTAAGATTAAGAAGCGAGCTGTTCTTAACGATATCACTAAT 240 ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| Sbjct 383 GAGAAGAAAGCCAATGCACC------TAAGAAGCGAGCTGTTCTTAAGGATATCACTAAT 436 Query 241 GTTACCTGCGAGAATTCTTACACAAATTGCTTCAGTGTTGCGGTGGAGAATATCAAGCTG 300 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 437 GTTACCTGCGAGAATTCTTACACAAGTTGCTTCAGTGTTGCGGTGGAGAATATCAAGCAG 496 Query 301 ATAAAGAAGGGACGACCGAG------TTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCA 354 |||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 497 ATAAAGAAGGGACGACAGAGTTCTTCTTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCA 556 Query 355 CAAGTTACAGATGCAAAGGT---A-----G---------G-A-G-G-AAGCTCGTCTGGT 393 |||||||||||||||||||| | | | | | | ||||| ||||| | Sbjct 557 CAAGTTACAGATGCAAAGGTAGAAGTTGTGTCAAATTCAGCAGGAGCAAGCTTGTCTGTT 616 Query 394 TGTACAGATACAAGCTTAGGCACAAACGAAGCATCTTATAGCTTTATCGCAAAGCCAAGT 453 | |||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 617 TTTACAGATACAAGCTTAGGCACAAACGAAACATCCTATAGCATTATCGCAAAGCCAAGC 676 Query 454 TCCAGATTGCCTCCAAGACCCCTTGGGAGAGTTGAAAAGAGTGGTGTCGGAGCAAGTTCC 513 ||||||| ||||||||||||| |||||| ||||| |||| || | | | | | Sbjct 677 TCCAGATCGCCTCCAAGACCCTTTGGGACAGTTG---AGAGAAGT-T--GTG---G-T-- 724 Query 514 AGTGTGGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGACCCTCTGCTC 573 | | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 725 -G-G-AGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGATCCTCTACTC 781 Query 574 TGTAGCCTTTATGCACCTGATATCTACTACAACCTGCGTGTTGCTGAGCTCAATCGCAGA 633 |||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||| Sbjct 782 TGTAGCCTTTATGCACCTGACATCTACTACAACCTGCGTGTTGCTGAGCTTAAACGAAGA 841 Query 634 CCATTTCCTGATTTTATGGAGAGAACACAAAGAGATGTGACTGAGACAATGCGGGGAATT 693 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 842 CCATTTCCTGATTTTATGGAGAAAACACAAAGAGATGTGACTGAGACAATGCGGGGAATT 901 Query 694 CTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTCTAC 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 902 CTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTTTAC 961 Query 754 CTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTACGTGGAAAGACAGAGACTT 813 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 962 CTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTATGTGGAAAGACAGAGACTT 1021 Query 814 CAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAATATGAGGAAATCAATGCGCCA 873 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1022 CAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAGTATGAGGAAATCCATGCGCCA 1081 Query 874 CGAATTGAGGAGTTCTGCTTCATCACGGATAACACTTACACAAGAGATCAGGTCCTGGAA 933 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1082 CGCATTGAGGAGTTCTGCTTCATCACGGATAACACTTATACAAGAGATCAGGTCCTGGAA 1141 Query 934 ATGGAGAGCCAAGTAGTCAAGCATTTTAGCTTTCAAATATACACCCCCACTTCAAAAACA 993 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1142 ATGGAGAGCCAAGTACTCAAGCATTTTAGCTTTCAAATTTACACCCCCACTTCAAAAACA 1201 Query 994 TTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCCAAGTCTGGAAATG 1053 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1202 TTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCAAAGTCTGGAAATG 1261 Query 1054 GAGTTCCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTC 1113 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 GAGTTTCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTC 1321 Query 1114 CTGCCTTCGGTCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTGAACCAATCA 1173 || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1322 CTTCCTTCGATCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTAAACCAATCA 1381 Query 1174 AGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAA 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1382 AGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAA 1441 Query 1234 GCATCTGTCCACGCTTTGCAAGATCTT-CAGCTTAACACCAAAGGATGTCCCTTGAACTC 1292 |||||||||||||| ||||||||| || ||||||||||||||||||||| |||| ||||| Sbjct 1442 GCATCTGTCCACGCCTTGCAAGAT-TTACAGCTTAACACCAAAGGATGTTCCTTAAACTC 1500 Query 1293 TATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTTAGTTCAACAGA 1352 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1501 TATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTCAGTTCTGGAGA 1560 Query 1353 GCTACCAGAGAAGCTATTCATCTCCTAA 1380 |||||| || |||||||||||||||||| Sbjct 1561 GCTACCGGACAAGCTATTCATCTCCTAA 1588 > AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5362009-5365549 FORWARD LENGTH=1886 Length=1886 Score = 837 bits (453), Expect = 0.0 Identities = 695/814 (85%), Gaps = 8/814 (1%) Strand=Plus/Plus Query 528 CCCGAAATTCGTTGACATTGATTCAGATGACAAAGACCCTCTGCTCTG-TAGCCTTTATG 586 ||| ||||| || ||||| |||||||||||||| || ||| | || || | |||| |||| Sbjct 709 CCCAAAATTTGTAGACATCGATTCAGATGACAAGGATCCTTTACTGTGCT-GCCTCTATG 767 Query 587 CACCTGATATCTACTACAACCTGCGTGTTGCTGAGCTCAATCGCAGACCATTTCCTGATT 646 | ||||| ||| ||||||| |||||||| | ||||| || ||||||||| |||| || | Sbjct 768 CCCCTGAAATCCACTACAATTTGCGTGTTTCAGAGCTTAAACGCAGACCACTTCCGGACT 827 Query 647 TTATGGAGAGAACACA-AAGAGATGTGACTGAGACAATGCGGGGAATTCTTGTTGATTGG 705 |||||||||||| ||| ||| ||||| || || | |||||||||||||| ||||||||| Sbjct 828 TTATGGAGAGAATACAGAAG-GATGTCACCCAGTCCATGCGGGGAATTCTGGTTGATTGG 886 Query 706 CTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTCTACCTCACAGTGTAT 765 ||||| |||||||| || ||||||||||||| | |||||||||||||||||||||||||| Sbjct 887 CTTGTGGAGGTCTCTGAAGAATACACACTTGCATCTGACACTCTCTACCTCACAGTGTAT 946 Query 766 CTCATAGACTGGTTTCTCCATGGAAACTACGTGGAAAGACAG-AGACTTCAATTGCTTGG 824 |||||||||||||| |||||||||||||||||| |||||||| | ||||||| |||| || Sbjct 947 CTCATAGACTGGTTCCTCCATGGAAACTACGTGCAAAGACAGCA-ACTTCAACTGCTCGG 1005 Query 825 CATCACTTGTATGCTCATTGCTTCGAAATATGAGGAAATCAATGCGCCACGAATTGAGGA 884 ||||||||| ||||| ||||| ||||| |||||||||||| ||| ||||| |||||||| Sbjct 1006 CATCACTTGCATGCTAATTGCCTCGAAGTATGAGGAAATCTCTGCTCCACGCATTGAGGA 1065 Query 885 GTTCTGCTTCATCACGGATAACACTTACACAAGAGATCAGGTCCTGGAAATGGAGAGCCA 944 ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1066 GTTTTGCTTCATTACGGATAACACCTACACAAGAGATCAGGTCCTGGAAATGGAGAACCA 1125 Query 945 AGTAGTCAAGCATTTTAGCTTTCAAATATACACCCCCACTTCAAAAACATTCCTCAGGAG 1004 |||| | |||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| Sbjct 1126 AGTACTTAAGCATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTTAGGAG 1185 Query 1005 ATTTCTTC-GAGCAGCTCAAGTTTCTTTCCCGAATCCAAGTCTGGAAATGGAGTTCCTGG 1063 |||||| | |||||||||||| ||| || || ||||| || ||| | ||||| || | Sbjct 1186 ATTTCT-CAGAGCAGCTCAAGCCTCTCGCCTGAGCCCAAGCCTTGAAGTCGAGTTTCTAG 1244 Query 1064 CGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTCCTGCCTTCGG 1123 | | || ||||| || ||||| ||||| ||||||| |||||| ||||| || ||||| | Sbjct 1245 CCAGCTATCTAACAGAGTTGACATTAATAGACTACCATTTCTTAAAGTTTCTTCCTTCCG 1304 Query 1124 TCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTGAACCAATCAAGCCACCCTT 1183 | | |||||||| || |||||||| |||||||||||| || ||||||||| |||||| | Sbjct 1305 TTGTTGCTGCTTCAGCGGTTTTTCTCGCCAAGTGGACAATGGACCAATCAAACCACCCAT 1364 Query 1184 GGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAAGCATCTGTCC 1243 |||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| | Sbjct 1365 GGAATCCAACACTTGAGCATTACACAACGTACAAAGCATCGGATCTGAAAGCATCTGTTC 1424 Query 1244 ACGCTTTGCAAGATCTTCAGCTTAACACCAAAGGATGTCCCTTGAACTCTATACGCATGA 1303 | || || |||||||| ||||||||||||||||| || ||||||| | |||||||||||| Sbjct 1425 ATGCCTTACAAGATCTGCAGCTTAACACCAAAGGTTGCCCCTTGAGCGCTATACGCATGA 1484 Query 1304 AGTATAGACAGGACAAGTTCAAATCCGTGGCGGT 1337 ||||||| || || || | |||||| |||||||| Sbjct 1485 AGTATAGGCAAGAGAAATACAAATCTGTGGCGGT 1518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67971537930 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5