BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316923
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80370.1 | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30213705-30... 1995 0.0
AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5362009-536... 837 0.0
> AT1G80370.1 | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30213705-30216861
FORWARD LENGTH=1588
Length=1588
Score = 1995 bits (1080), Expect = 0.0
Identities = 1307/1408 (93%), Gaps = 50/1408 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAAGGAGAATGCTGTTTCTGGAAACACTGTACCAATCCATGGTCGCCCTGTAACT 60
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 203 ATGGGGAAGGAGAATGCTGTTTCTGGAAACTCTATACCAATCCATGGTCGCCCTGTAACT 262
Query 61 CGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTCAAGTGGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 263 CGTGCTCTTGCCTCTGCTCTGCGTGCTTCTTCTAAGCTGATAACATCTTCTGAAGTGGCT 322
Query 121 GCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GCTACAACACAGAACCAGGGACGGGTTCTTAGAGCAAAGAGTAAAAGAACAGCCTTGGAT 382
Query 181 GAGAAGAAAGCTAATGCACCTAAGATTAAGAAGCGAGCTGTTCTTAACGATATCACTAAT 240
||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 383 GAGAAGAAAGCCAATGCACC------TAAGAAGCGAGCTGTTCTTAAGGATATCACTAAT 436
Query 241 GTTACCTGCGAGAATTCTTACACAAATTGCTTCAGTGTTGCGGTGGAGAATATCAAGCTG 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 437 GTTACCTGCGAGAATTCTTACACAAGTTGCTTCAGTGTTGCGGTGGAGAATATCAAGCAG 496
Query 301 ATAAAGAAGGGACGACCGAG------TTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCA 354
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 497 ATAAAGAAGGGACGACAGAGTTCTTCTTCTTCCAAGGTGGCATCTTCTTCGGCTACTTCA 556
Query 355 CAAGTTACAGATGCAAAGGT---A-----G---------G-A-G-G-AAGCTCGTCTGGT 393
|||||||||||||||||||| | | | | | | ||||| ||||| |
Sbjct 557 CAAGTTACAGATGCAAAGGTAGAAGTTGTGTCAAATTCAGCAGGAGCAAGCTTGTCTGTT 616
Query 394 TGTACAGATACAAGCTTAGGCACAAACGAAGCATCTTATAGCTTTATCGCAAAGCCAAGT 453
| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 617 TTTACAGATACAAGCTTAGGCACAAACGAAACATCCTATAGCATTATCGCAAAGCCAAGC 676
Query 454 TCCAGATTGCCTCCAAGACCCCTTGGGAGAGTTGAAAAGAGTGGTGTCGGAGCAAGTTCC 513
||||||| ||||||||||||| |||||| ||||| |||| || | | | | |
Sbjct 677 TCCAGATCGCCTCCAAGACCCTTTGGGACAGTTG---AGAGAAGT-T--GTG---G-T-- 724
Query 514 AGTGTGGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGACCCTCTGCTC 573
| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 725 -G-G-AGCAAGTAGCCCGAAATTCGTTGACATTGATTCAGATGACAAAGATCCTCTACTC 781
Query 574 TGTAGCCTTTATGCACCTGATATCTACTACAACCTGCGTGTTGCTGAGCTCAATCGCAGA 633
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 782 TGTAGCCTTTATGCACCTGACATCTACTACAACCTGCGTGTTGCTGAGCTTAAACGAAGA 841
Query 634 CCATTTCCTGATTTTATGGAGAGAACACAAAGAGATGTGACTGAGACAATGCGGGGAATT 693
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 842 CCATTTCCTGATTTTATGGAGAAAACACAAAGAGATGTGACTGAGACAATGCGGGGAATT 901
Query 694 CTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTCTAC 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 902 CTTGTTGATTGGCTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTTTAC 961
Query 754 CTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTACGTGGAAAGACAGAGACTT 813
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 CTCACAGTGTATCTCATAGACTGGTTTCTCCATGGAAACTATGTGGAAAGACAGAGACTT 1021
Query 814 CAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAATATGAGGAAATCAATGCGCCA 873
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1022 CAATTGCTTGGCATCACTTGTATGCTCATTGCTTCGAAGTATGAGGAAATCCATGCGCCA 1081
Query 874 CGAATTGAGGAGTTCTGCTTCATCACGGATAACACTTACACAAGAGATCAGGTCCTGGAA 933
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1082 CGCATTGAGGAGTTCTGCTTCATCACGGATAACACTTATACAAGAGATCAGGTCCTGGAA 1141
Query 934 ATGGAGAGCCAAGTAGTCAAGCATTTTAGCTTTCAAATATACACCCCCACTTCAAAAACA 993
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1142 ATGGAGAGCCAAGTACTCAAGCATTTTAGCTTTCAAATTTACACCCCCACTTCAAAAACA 1201
Query 994 TTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCCAAGTCTGGAAATG 1053
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1202 TTCCTCAGGAGATTTCTTCGAGCAGCTCAAGTTTCTTTCCCGAATCAAAGTCTGGAAATG 1261
Query 1054 GAGTTCCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTC 1113
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GAGTTTCTGGCGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTC 1321
Query 1114 CTGCCTTCGGTCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTGAACCAATCA 1173
|| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1322 CTTCCTTCGATCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTAAACCAATCA 1381
Query 1174 AGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AGCCACCCTTGGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAA 1441
Query 1234 GCATCTGTCCACGCTTTGCAAGATCTT-CAGCTTAACACCAAAGGATGTCCCTTGAACTC 1292
|||||||||||||| ||||||||| || ||||||||||||||||||||| |||| |||||
Sbjct 1442 GCATCTGTCCACGCCTTGCAAGAT-TTACAGCTTAACACCAAAGGATGTTCCTTAAACTC 1500
Query 1293 TATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTTAGTTCAACAGA 1352
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1501 TATACGCATGAAGTATAGACAGGACAAGTTCAAATCCGTGGCGGTATTCAGTTCTGGAGA 1560
Query 1353 GCTACCAGAGAAGCTATTCATCTCCTAA 1380
|||||| || ||||||||||||||||||
Sbjct 1561 GCTACCGGACAAGCTATTCATCTCCTAA 1588
> AT1G15570.1 | Symbols: CYCA2;3 | CYCLIN A2;3 | chr1:5362009-5365549
FORWARD LENGTH=1886
Length=1886
Score = 837 bits (453), Expect = 0.0
Identities = 695/814 (85%), Gaps = 8/814 (1%)
Strand=Plus/Plus
Query 528 CCCGAAATTCGTTGACATTGATTCAGATGACAAAGACCCTCTGCTCTG-TAGCCTTTATG 586
||| ||||| || ||||| |||||||||||||| || ||| | || || | |||| ||||
Sbjct 709 CCCAAAATTTGTAGACATCGATTCAGATGACAAGGATCCTTTACTGTGCT-GCCTCTATG 767
Query 587 CACCTGATATCTACTACAACCTGCGTGTTGCTGAGCTCAATCGCAGACCATTTCCTGATT 646
| ||||| ||| ||||||| |||||||| | ||||| || ||||||||| |||| || |
Sbjct 768 CCCCTGAAATCCACTACAATTTGCGTGTTTCAGAGCTTAAACGCAGACCACTTCCGGACT 827
Query 647 TTATGGAGAGAACACA-AAGAGATGTGACTGAGACAATGCGGGGAATTCTTGTTGATTGG 705
|||||||||||| ||| ||| ||||| || || | |||||||||||||| |||||||||
Sbjct 828 TTATGGAGAGAATACAGAAG-GATGTCACCCAGTCCATGCGGGGAATTCTGGTTGATTGG 886
Query 706 CTTGTAGAGGTCTCAGAGGAATACACACTTGTACCTGACACTCTCTACCTCACAGTGTAT 765
||||| |||||||| || ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 887 CTTGTGGAGGTCTCTGAAGAATACACACTTGCATCTGACACTCTCTACCTCACAGTGTAT 946
Query 766 CTCATAGACTGGTTTCTCCATGGAAACTACGTGGAAAGACAG-AGACTTCAATTGCTTGG 824
|||||||||||||| |||||||||||||||||| |||||||| | ||||||| |||| ||
Sbjct 947 CTCATAGACTGGTTCCTCCATGGAAACTACGTGCAAAGACAGCA-ACTTCAACTGCTCGG 1005
Query 825 CATCACTTGTATGCTCATTGCTTCGAAATATGAGGAAATCAATGCGCCACGAATTGAGGA 884
||||||||| ||||| ||||| ||||| |||||||||||| ||| ||||| ||||||||
Sbjct 1006 CATCACTTGCATGCTAATTGCCTCGAAGTATGAGGAAATCTCTGCTCCACGCATTGAGGA 1065
Query 885 GTTCTGCTTCATCACGGATAACACTTACACAAGAGATCAGGTCCTGGAAATGGAGAGCCA 944
||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1066 GTTTTGCTTCATTACGGATAACACCTACACAAGAGATCAGGTCCTGGAAATGGAGAACCA 1125
Query 945 AGTAGTCAAGCATTTTAGCTTTCAAATATACACCCCCACTTCAAAAACATTCCTCAGGAG 1004
|||| | |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||
Sbjct 1126 AGTACTTAAGCATTTTAGCTTTCAAATATACACTCCCACTCCAAAAACGTTCCTTAGGAG 1185
Query 1005 ATTTCTTC-GAGCAGCTCAAGTTTCTTTCCCGAATCCAAGTCTGGAAATGGAGTTCCTGG 1063
|||||| | |||||||||||| ||| || || ||||| || ||| | ||||| || |
Sbjct 1186 ATTTCT-CAGAGCAGCTCAAGCCTCTCGCCTGAGCCCAAGCCTTGAAGTCGAGTTTCTAG 1244
Query 1064 CGAATTACCTAACGGAATTGACGTTAATGGACTACCCTTTCTTGAAGTTCCTGCCTTCGG 1123
| | || ||||| || ||||| ||||| ||||||| |||||| ||||| || ||||| |
Sbjct 1245 CCAGCTATCTAACAGAGTTGACATTAATAGACTACCATTTCTTAAAGTTTCTTCCTTCCG 1304
Query 1124 TCATCGCTGCTTCGGCTGTTTTTCTTGCCAAGTGGACATTGAACCAATCAAGCCACCCTT 1183
| | |||||||| || |||||||| |||||||||||| || ||||||||| |||||| |
Sbjct 1305 TTGTTGCTGCTTCAGCGGTTTTTCTCGCCAAGTGGACAATGGACCAATCAAACCACCCAT 1364
Query 1184 GGAATCCAACTCTTGAGCATTACACAACGTACAAAGCCTCCGATCTCAAAGCATCTGTCC 1243
|||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 1365 GGAATCCAACACTTGAGCATTACACAACGTACAAAGCATCGGATCTGAAAGCATCTGTTC 1424
Query 1244 ACGCTTTGCAAGATCTTCAGCTTAACACCAAAGGATGTCCCTTGAACTCTATACGCATGA 1303
| || || |||||||| ||||||||||||||||| || ||||||| | ||||||||||||
Sbjct 1425 ATGCCTTACAAGATCTGCAGCTTAACACCAAAGGTTGCCCCTTGAGCGCTATACGCATGA 1484
Query 1304 AGTATAGACAGGACAAGTTCAAATCCGTGGCGGT 1337
||||||| || || || | |||||| ||||||||
Sbjct 1485 AGTATAGGCAAGAGAAATACAAATCTGTGGCGGT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5