BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316927
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80330.1 | Symbols: ATGA3OX4, GA3OX4 | gibberellin 3-oxidase... 1568 0.0
> AT1G80330.1 | Symbols: ATGA3OX4, GA3OX4 | gibberellin 3-oxidase
4 | chr1:30198061-30199537 REVERSE LENGTH=1068
Length=1068
Score = 1568 bits (849), Expect = 0.0
Identities = 997/1070 (93%), Gaps = 4/1070 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCATTAGCAGAAGAGATATGTATTGGAAACTTAGGCAGTCTCCAAACACTCCCC 60
||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGCCTTCACTAGCAGAAGAGATATGTATTGGTAACTTAGGCAGTCTCCAAACACTCCCC 60
Query 61 GACTCGTTCACCTGGAAACTCACCGCCGCCGACTCCGTTCTGCCTCCCTCCTCTGCCGTC 120
|| |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||
Sbjct 61 GAGTCGTTCACCTGGAAACTCACAGCCGCCGACTCCCTTCTGCGTCCCTCCTCCGCCGTC 120
Query 121 TC-CTCAGGTACAGTGGAAGAGTCCATTCCGGTGATCGACCTCTCCGATTCTGACGTCAC 179
|| || | ||||||||||||||||||| |||||||||||||| || ||||||| ||
Sbjct 121 TCATTC-GACGCAGTGGAAGAGTCCATTCCTGTGATCGACCTCTCTAATCCTGACGTTAC 179
Query 180 CACTCTCATAGGAAATGCGTGTAAAACGTGGGGAGCGTTTCAGATAGCCAACCACGGGAT 239
||| ||||| ||| |||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CACCCTCATTGGAGATGCCTCCAAAACATGGGGAGCGTTTCAGATAGCCAACCACGGGAT 239
Query 240 TTCTCAGAAGCTCCTCGACGATATCGAGTCTCTGTCCAAAACCCTTTTTGATATGCCGTC 299
|||||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 240 TTCTCAGAAGCTTCTCGATGATATCGAGTCTCTGTCCAAAACCCTATTCGACATGCCGTC 299
Query 300 AGAGAGGAAGCTTGAAGCGGCTTCCTCCGATAAAGGAGTTAGTGGCTACGGAGAACCTCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGAGGAAGCTTGAAGCGGCTTCCTCCGATAAAGGAGTTAGTGGCTACGGAGAACCTCG 359
Query 360 AATCTCTCCCTTTTTCGAGAAGAAAATGTGGTCTGAAGGGTTCACGATAGCGGATGCCTC 419
|||||| ||||||||||||||||||||||||||||||||||| || || || |||| |||
Sbjct 360 AATCTCCCCCTTTTTCGAGAAGAAAATGTGGTCTGAAGGGTTTACTATTGCCGATGACTC 419
Query 420 CTATCGCAACCATTTCATTTCTCTTTGGCCTCATGATCACACCAAGTACTGCGGAATAAT 479
||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CTACCGCAACCATTTCAATACTCTTTGGCCTCATGATCACACCAAGTACTGCGGTATAAT 479
Query 480 GGAAGAATACGTGGACGAAATGGAAAAATTAGCGAGCAAACTTGTGTCTTGCATATTAGG 539
||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||
Sbjct 480 CCAAGAATACGTGGACGAAATGGAAAAATTAGCAAGCAGACTTCTGTATTGCATATTAGG 539
Query 540 CTCACTTGGTGTCACCGTGGAAGACATTGGATGGGCTCACAAGCTAGAGAAATCTGGATC 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 CTCACTTGGTGTCACCGTGGAAGACATTGAATGGGCTCACAAGCTAGAGAAATCTGGATC 599
Query 600 AAAAGTGGGCCGAGGCGCCATACGACTAAACCATTACCCGGTTTGTCCTGAACCAGAACG 659
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AAAAGTGGGCAGAGGCGCCATACGACTAAACCACTACCCGGTTTGTCCTGAACCAGAACG 659
Query 660 AGCCATGGGTTTAGCCGCTCATACAGATTCCACTATCCTAACCATTCTGCACCAGAGCAA 719
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AGCCATGGGTCTAGCCGCTCATACAGACTCCACTATCCTAACCATTCTGCACCAGAGCAA 719
Query 720 CACGGGAGGGCTACAAGTGTTCAGGGAAGAGTCCGGTTGGGTTACGGTTGAGCCAGTTCC 779
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 720 CACGGGAGGGCTACAAGTGTTCAGGGAAGAGTCCGGTTGGGTCACGGTTGAGCCGGCTCC 779
Query 780 TGGTGTCCTCGTGGTCAACATGGGCGATCTCTTTCACATCTTATCAAACGGGAAAATCCC 839
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 780 TGGTGTCCTCGTGGTCAACATTGGTGATCTCTTTCACATCTTATCGAACGGGAAAATCCC 839
Query 840 AAGCGTGGTTCACCGAGCCAAAGTCAACCATACTCGGTCAAGAATTTCGATTGCGTACTT 899
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 AAGCGTGGTTCATCGAGCCAAAGTTAACCATACTCGGTCAAGAATTTCGATTGCGTACTT 899
Query 900 GTGGGGTGGTCCAGCTGGTGAAGTGCAAATCGCACCTATATCTAAGTTAATCGGTCCGGT 959
|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 900 ATGGGGTGGTCCAGCTGGTGATGTGCAAATCGCACCTATCTCTAAGTTAACCGGTCCGGC 959
Query 960 TGAACCGTCTCTATACCGATCAATCACATGGAAGGAGTATCTCCAAATAAAGTACGAGGT 1019
|||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||
Sbjct 960 TGAACCGTCTCTTTACCGGTCAATTACATGGAAAGAGTATCTCCAAATAAAGTATGAGGT 1019
Query 1020 TTTCGACAAGGC-ATTGGACGCAATTAGGGTCATTAATCCCACCAATTAA 1068
|||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 1020 TTTCGACAAGGCCAT-GGACGCAATTAGGGTCGTTAATCCCACCAATTAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5