BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316935
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80245.1 | Symbols: | Spc97 / Spc98 family of spindle pole ... 593 3e-169
AT4G00695.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 435 2e-121
> AT1G80245.1 | Symbols: | Spc97 / Spc98 family of spindle pole
body (SBP) component | chr1:30174178-30175542 FORWARD LENGTH=829
Length=829
Score = 593 bits (321), Expect = 3e-169
Identities = 357/375 (95%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAATTAAGCCAACTCTTGAAGAACAATAGGACGGATGATCTCACTTGGTTTTGC 60
||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATGGAGGAATTAACCCAAATCTTGAAGAACAATAGGACAGATGATCTCACTTGGTTTTGC 180
Query 61 TCTCTCTCTGAATCTGAACTGGATTTGCTCATCAGCTTAAAGAAGCTAGCCATTCAACGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCTCTCTGAATCTGAACTGGATTTGCTCATCAGCTTAAAGAAGCTAGCCATTCAACGC 240
Query 121 GCCAAAATAAGTGGTCACCAAGAACTAGCTGACAAATTTGATCTCAAGTTGCTCCGAGCT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 241 GCCAAAATAAGTGGTCACCAAGAACTAGCTGACAAATTTGATCTTAAGTTGCTCCGATCT 300
Query 181 CTCGGGCTTGTGCTAATGGAGTACGTGaaaaaaaGGGTACAAGATGATACTTGTCTTGCC 240
||||||||||||||||||||| ||| || |||||||||||| ||||||||| ||||||
Sbjct 301 CTCGGGCTTGTGCTAATGGAGCACGCGAGGAAAAGGGTACAAAATGATACTTCTCTTGCT 360
Query 241 CCAAGTGTTGTTCATCAGCTCAGGCTTTTGGATAACTGCAATTTGTTGAAAACGCATGAA 300
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CCGAGTGTTGTTCATCAACTCAGGCTTTTGGATAACTGCAATTTGTTGAAAACGCATGTA 420
Query 301 GATGATACTGTAGACATGGAGGAGATTCTGACTCAAATCTGCGAAAACAAATCAAAAAAG 360
|||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GATGATGCTGTAGACATTGAGGAGATTCTGACTCAAATCTGCGACAACAAATCAAAAAAG 480
Query 361 AAAGCACGGAAAAGG 375
|||||||||||||||
Sbjct 481 AAAGCACGGAAAAGG 495
> AT4G00695.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
BEST Arabidopsis thaliana protein match is: Spc97 / Spc98
family of spindle pole body (SBP) component (TAIR:AT1G80245.3).
| chr4:283914-285975 FORWARD LENGTH=634
Length=634
Score = 435 bits (235), Expect = 2e-121
Identities = 310/346 (90%), Gaps = 5/346 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAATTAAGCCAACTCTTGAAGAACAATAGGACGGATGATCTCACTTGGTTTTGC 60
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 91 ATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTCACTTGGTTTTGC 150
Query 61 TCTCTCTCTGAATCTGAACTGGATTTGCTCATCAGCTTAAAGAAGCTAGCCATTCAACGC 120
|||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 151 TCTCTCTCAGAATCTGAACTGGATTTGCTCATCAGCTTAAAAAAGCTAGTCATTCGACGT 210
Query 121 GCCAAAATAAGTGGTCACCAAGAACTAG---CTGACAAATTTGATCTCAAGTTGCTCCGA 177
|||||| ||||||||| | |||| |||| |||||||||||||||| ||| ||||||||
Sbjct 211 GCCAAAGTAAGTGGTCTCGAAGATCTAGTAGCTGACAAATTTGATCTTAAGATGCTCCGA 270
Query 178 GCTCTCGGGCTTGTGCTAATGGAGTACGTGaa-aaaaaGGGTACAAGATGATACTTGTCT 236
||||||||||||||||||||||||| || || |||||| ||| |||||||||||| |||
Sbjct 271 TCTCTCGGGCTTGTGCTAATGGAGTATGT-AAGAAAAAGAGTAGAAGATGATACTTCTCT 329
Query 237 TGCCCCAAGTGTTGTTCATCAGCTCAGGCTTTTGGATAACTGCAATTTGTTGAAAACGCA 296
||||||||||||||| || | ||||| |||||||||| || || ||||||||||||||
Sbjct 330 TGCCCCAAGTGTTGTCCAAGAACTCAGCCTTTTGGATAGTTGTAACTTGTTGAAAACGCA 389
Query 297 TGAAGATGATACTGTAGACATGGAGGAGATTCTGACTCAAATCTGC 342
|| |||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 390 TGTAGATGATACTGTAGACATTGAGGAGATTCTGACTGATATCTGC 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19604422110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5