BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316941
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80190.1 | Symbols: PSF1 | partner of SLD five 1 | chr1:3015... 961 0.0
> AT1G80190.1 | Symbols: PSF1 | partner of SLD five 1 | chr1:30159077-30161654
FORWARD LENGTH=1437
Length=1437
Score = 961 bits (520), Expect = 0.0
Identities = 580/609 (95%), Gaps = 3/609 (0%)
Strand=Plus/Plus
Query 1 ATGTACGGGAGAAAAGGTTATCAGCTTGTCAAAGATTTTGCCACCGGAGAGAAGGGTCAG 60
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 293 ATGTACGGGAGAAAAGGGTATCAGCTTATCAAAGATTTTGCCACCGGAGAGAAGGGTCAG 352
Query 61 CTCAAACCTTTTAACAGAAAACTCTTTGACGAGACAATCGAAGAGTGTGACCAGAATCAC 120
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 353 CTCAAACCTTTCAACAGCAAACTCTTTGATGAAACAATCGAAGAGTGTGACCAGAATCAC 412
Query 121 CATCTTATCCAGTCCTTGATAAGGTGGAAGATGCAGCAACAAGGTTTGGATGTTCAGAAC 180
|||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||
Sbjct 413 CATCTTATCCAGTCCTTGATAA---GGAAAATGCAACAAGAAGGTTTGGATGTTCAGAAC 469
Query 181 AACAGAAACGCAGACCACTATGGAGCACTAATCCACCACCTTTCTTTGATCCGGAACAAG 240
||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 470 AACAGAAACGCTGACCACTATGGAGCACTAATTCACCACCTTGCTTTGATCCGGAACAAG 529
Query 241 CGCTGCCTCATGGCTTATGTGTTCAACCGAGCAGAAATTGTGCGTGATTTGGCGTGGAGA 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 530 CGCTGCCTCATGGCTTATGTGTACAACCGAGCAGAAATTGTGCGTGATTTGGCATGGAGA 589
Query 301 GTAGGACTTGAACTTCTCGACCTTCCCTCCGAAATCCAAGAGAAGCTCACTACACTAGAG 360
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 590 GTAGGGCTTGAACTTCTCGACCTTCCCTCTGAAATCCAAGAGAAGCTCACTACACTAGAG 649
Query 361 AAGGAGTACTTCAAGAACCATTCGGTAGCTCTAAAATCATACATGGGAAAAGTAGGAATC 420
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 650 AAGGAATACTTCAAAAACCATTCGGTTGCTCTAAAATCATACATGGGAAAAGTAGGAATC 709
Query 421 GAGTTGAATGTCGATATGGTGCCTCCTAAAGATCCTTATATCAAGGTCAGAATTTTGGAT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 710 GAGTTGAATGTCGATATGGTCCCTCCTAAAGATCCTTATATCAAGGTCAGAATTTTGGAT 769
Query 481 GATATTGATGAAGGAATCGTCCTGAGTGACAAAGCAACAAATTTTGCCCGTCATTCTATG 540
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 770 GATATTGATGAAGGAATCGTGCTGAGTGACAAAACAACAAATTTTGCCCGTCATTCTATG 829
Query 541 CACTTCCTCAAACGAACTGATGCGGAACCGTACATTGCTCGGGGCCAAATGGAGGAGCTG 600
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 830 CATTTCCTCAAACGTACTGATGCGGAACCATACATTGCTCGGGGCCAAATGGAGGAGCTG 889
Query 601 ACAGGTTGA 609
||||| |||
Sbjct 890 ACAGGATGA 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5