BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316945
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80160.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 760 0.0
> AT1G80160.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr1:30151003-30152190 FORWARD LENGTH=862
Length=862
Score = 760 bits (411), Expect = 0.0
Identities = 459/482 (95%), Gaps = 3/482 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGAAGATACTACCGGAAACCCTCTGCATATCAAGTCTTTGAATCACATCTCTCTT 60
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATGAAGGACGA-A--ACGGGAAACCCTCTGCATATCAAGTCTTTGAATCACATCTCTCTT 155
Query 61 CTCTGCCGATCCGTTGAGGAATCCATTAGCTTTTACCACAACGTTTTAGGGTTCCTCCCT 120
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 156 CTCTGTCGATCCGTCGAGGAATCCATTAGCTTTTACCAAAACGTTTTAGGGTTCCTCCCT 215
Query 121 ATTCGCAGACCTGGCTCTTTTGATTTCGATGGCGCTTGGTTGTTTGGACATGGAATTGGG 180
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 216 ATTCGCAGACCTGACTCTTTTGATTTCGATGGCGCGTGGTTGTTTGGACATGGAATTGGG 275
Query 181 ATTCATCTTCTTCAATCTCCTGAACCTGAGAAATTACTCAAGAAAACAGAGATTAATCCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ATTCATCTTCTTCAATCTCCTGAACCTGAGAAATTACTCAAGAAAACAGAGATTAATCCC 335
Query 241 AAGGACAATCACATTTCTTTCCAGTGCGAAAGCATGGAAGCGGTGGAGAAGAAGCTCAAG 300
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 AAGGATAATCACATTTCTTTCCAGTGCGAAAGCATGGAAGCAGTGGAGAAGAAGCTCAAG 395
Query 301 GAGTTGGAGATAAAGTATGTGAGAGCAGTGGTGGAAGAAGGAGGCATCCAAGTGGACCAA 360
||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 396 GAGATGGAGATAGAGTATGTGAGAGCAGTGGTTGAAGAAGGTGGCATCCAAGTGGACCAA 455
Query 361 CTCTTCTTCCACGACCCTGATGCCTTCATGATTGAGATCTGCAACTGCGATAGCCTCCCC 420
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 456 CTCTTCTTCCACGACCCTGATGCCTTCATGATCGAGATATGCAACTGCGATAGCCTCCCC 515
Query 421 GTTGTCCCTCTCGCTGGCGAGATGGCTCGTTCCTGCTCTCGACTCAATATCCGCCAGCTC 480
||| ||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||
Sbjct 516 GTTATCCCTCTCGCTGGAGAAATGGCTCGTTCATGCTCTCGACTTAATATCCGCCAGCTC 575
Query 481 GT 482
||
Sbjct 576 GT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5