BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg316947 Length=1125 Score E Sequences producing significant alignments: (Bits) Value AT1G80140.1 | Symbols: | Pectin lyase-like superfamily protein... 1541 0.0 > AT1G80140.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:30146611-30148180 FORWARD LENGTH=1011 Length=1011 Score = 1541 bits (834), Expect = 0.0 Identities = 973/1036 (94%), Gaps = 26/1036 (3%) Strand=Plus/Plus Query 91 ATGGGAAGTGTAAATGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACG 150 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGTGTAAACGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACG 60 Query 151 GGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGT 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGT 120 Query 211 GATCCAAAGAAGTGGGAAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAA 270 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATCCACAGAAGTGGGGAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAA 180 Query 271 GTGGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGAAAATCATGGTGG 330 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 GTAGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGCAAATCATGGTGG 240 Query 331 GATATTCATTGTAGAGACCATGCCGGACCCAACTGCATCTGGCTTGCACCAACGATGATG 390 ||||||||||||||||||||| | | | | | ||| | |||||| Sbjct 241 GATATTCATTGTAGAGACCAT-----------C--C--C--G---G-ACC--C-ATGATG 276 Query 391 ACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTCAGAAATAGTGCACAA 450 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 277 ACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTTAGAAATAGTGCACAA 336 Query 451 ACACATGTTCTTGTGATGGGAAGCCATAATGTGTATATAAATGATATCAAAATAACCTCA 510 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| Sbjct 337 ACACATGTTCTTGTGATGGGAAGCCAAAATGTGTATATCGATGATATCAAAATAACATCA 396 Query 511 CCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGTCGTTTCTATC 570 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 397 CCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGCCGTTTCTATC 456 Query 571 AATCACTCTGACATCGCCACTGGTGATGATTGTGTGTCTATCGGAGATCAAGTGAATAAT 630 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 457 AATCATTCTGACATCGCCACTGGTGATGATTGTGTGTCGATCGGAGATCAAGTGAATAAT 516 Query 631 TTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGACAGCATTGGGAGTTTAGGC 690 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 517 TTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGTGAGCATTGGGAGTTTAGGT 576 Query 691 AGAGGAGGAACAGAGGTAGCAGTGGAAAACATACGTGTGTAGCACGTTAACTTCACGGGA 750 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| Sbjct 577 AGAGGAGGAACAGAGGTAACAGTGGAAAACATACGTGTGTCGCACGTTAACTTCACTGGA 636 Query 751 ACAACAAACGGAGCTCGAATCAAGACGTGGCCTGGAGGAACTGGTTATGTCCGAGGAATC 810 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 637 ACAACAAACGGAGCTCGAATCAAGACTTGGCCTGGAGGAACTGGTTACGTCCGAGGAATC 696 Query 811 GAGTTCTTCGACATCCATTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTAC 870 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 GAGTTCTTCGATATCCGTTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTAC 756 Query 871 GGTTGTGCCCCTAAATGCGTTGAGACTA-GAAAGGGAGTCCACATAGAGAAAGTGAGATA 929 ||||||||||||| |||||||||||||| | |||||||| |||||||||||||||||||| Sbjct 757 GGTTGTGCCCCTACATGCGTTGAGACTATG-AAGGGAGTTCACATAGAGAAAGTGAGATA 815 Query 930 CATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAGCTCGAGTGTTCAGGGGA 989 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 816 CATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAACTCGAGTGTTCAGGGGA 875 Query 990 GAGTGTCCCATGTTCCAACCTTTTGATGAGAGACATTGACTTATCTCCAGCCGATGGCAT 1049 |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 876 GAGTGTTCCATGTTCCAACCTTTTCATGAGAGACATTGACTTATCTCCGGCCGATGGTAT 935 Query 1050 TGGTTCTGTCTCCTCTCTCTGCTCTTTTGTTCACGGCTCCGCACAAGGCCTCATCCGACC 1109 || |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| Sbjct 936 TGATTCTGTCTCCTCTCTCTGCTCTTTTGCTCACGGCTCCGCACAAGGCATCATTCGACC 995 Query 1110 TTCCTCCTGTCTCTAA 1125 || |||||| ||||| Sbjct 996 TTTATCCTGTTTCTAA 1011 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55170398955 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5