BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316947
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80140.1 | Symbols: | Pectin lyase-like superfamily protein... 1541 0.0
> AT1G80140.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:30146611-30148180 FORWARD LENGTH=1011
Length=1011
Score = 1541 bits (834), Expect = 0.0
Identities = 973/1036 (94%), Gaps = 26/1036 (3%)
Strand=Plus/Plus
Query 91 ATGGGAAGTGTAAATGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACG 150
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTGTAAACGTACCAGCAGGGAAGGTGTTCCTCCTCAACTCCCTTCACTTCACG 60
Query 151 GGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGT 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTCCTTGCATACCCAAACCTCTCCTTTTCATTATCGATGGAGAGATGATAGCGCAGAGT 120
Query 211 GATCCAAAGAAGTGGGAAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAA 270
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCCACAGAAGTGGGGAAATGGTGAGAACGGGGTAATACCATGGCTCATATTCGATCAA 180
Query 271 GTGGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGAAAATCATGGTGG 330
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GTAGATGGACTTGCAATCGTAGGGCGCGGCTTGTTGGACGGCCAAGGCAAATCATGGTGG 240
Query 331 GATATTCATTGTAGAGACCATGCCGGACCCAACTGCATCTGGCTTGCACCAACGATGATG 390
||||||||||||||||||||| | | | | | ||| | ||||||
Sbjct 241 GATATTCATTGTAGAGACCAT-----------C--C--C--G---G-ACC--C-ATGATG 276
Query 391 ACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTCAGAAATAGTGCACAA 450
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 277 ACATTTAGCAACTGCGGAAATGTAACATTAAAGAGTTTGAGATTTAGAAATAGTGCACAA 336
Query 451 ACACATGTTCTTGTGATGGGAAGCCATAATGTGTATATAAATGATATCAAAATAACCTCA 510
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct 337 ACACATGTTCTTGTGATGGGAAGCCAAAATGTGTATATCGATGATATCAAAATAACATCA 396
Query 511 CCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGTCGTTTCTATC 570
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 397 CCGGAGGCTAGCCCTAACACCGACGGTATTCACATCACATCTTCCACCGCCGTTTCTATC 456
Query 571 AATCACTCTGACATCGCCACTGGTGATGATTGTGTGTCTATCGGAGATCAAGTGAATAAT 630
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 457 AATCATTCTGACATCGCCACTGGTGATGATTGTGTGTCGATCGGAGATCAAGTGAATAAT 516
Query 631 TTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGACAGCATTGGGAGTTTAGGC 690
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 517 TTGAATGTTACTTTTATGAATTGCGGACCTGGTCACGGTGTGAGCATTGGGAGTTTAGGT 576
Query 691 AGAGGAGGAACAGAGGTAGCAGTGGAAAACATACGTGTGTAGCACGTTAACTTCACGGGA 750
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 577 AGAGGAGGAACAGAGGTAACAGTGGAAAACATACGTGTGTCGCACGTTAACTTCACTGGA 636
Query 751 ACAACAAACGGAGCTCGAATCAAGACGTGGCCTGGAGGAACTGGTTATGTCCGAGGAATC 810
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 637 ACAACAAACGGAGCTCGAATCAAGACTTGGCCTGGAGGAACTGGTTACGTCCGAGGAATC 696
Query 811 GAGTTCTTCGACATCCATTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTAC 870
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GAGTTCTTCGATATCCGTTTCTCGTCTGTACAAAACCCCATCATCATTGATCAGTTCTAC 756
Query 871 GGTTGTGCCCCTAAATGCGTTGAGACTA-GAAAGGGAGTCCACATAGAGAAAGTGAGATA 929
||||||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 757 GGTTGTGCCCCTACATGCGTTGAGACTATG-AAGGGAGTTCACATAGAGAAAGTGAGATA 815
Query 930 CATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAGCTCGAGTGTTCAGGGGA 989
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 816 CATGAAGATGAGTGGAACATCGGCGACAAAGGTGGCTATGAAACTCGAGTGTTCAGGGGA 875
Query 990 GAGTGTCCCATGTTCCAACCTTTTGATGAGAGACATTGACTTATCTCCAGCCGATGGCAT 1049
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 876 GAGTGTTCCATGTTCCAACCTTTTCATGAGAGACATTGACTTATCTCCGGCCGATGGTAT 935
Query 1050 TGGTTCTGTCTCCTCTCTCTGCTCTTTTGTTCACGGCTCCGCACAAGGCCTCATCCGACC 1109
|| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||
Sbjct 936 TGATTCTGTCTCCTCTCTCTGCTCTTTTGCTCACGGCTCCGCACAAGGCATCATTCGACC 995
Query 1110 TTCCTCCTGTCTCTAA 1125
|| |||||| |||||
Sbjct 996 TTTATCCTGTTTCTAA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5