BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316979

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79780.1 | Symbols:  | Uncharacterised protein family (UPF04...   933    0.0  
  AT1G79770.1 | Symbols:  | Protein of unknown function (DUF1677)...   725    0.0  


> AT1G79780.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr1:30015873-30016856 FORWARD LENGTH=621
Length=621

 Score =  933 bits (505),  Expect = 0.0
 Identities = 549/570 (96%), Gaps = 3/570 (1%)
 Strand=Plus/Plus

Query  525   GGTTCGAATgaggagaaatggagaaggggaagaggtggtggcgaagaggaggagg-a--g  581
             ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |  |
Sbjct  51    GGTTCGAATGACGAGTAATGGAGAAGGGGGAGAGGTGGTGGCGAAGAGGAGGAGGAAGGG  110

Query  582   aattaaggagCTAGTGCAGGTGGCTCTCAGGGGAGGTTGCTTGGCTGCTTCAGCCACGGC  641
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  111   AATTAAGGAGCTAGTGCAGGTGGCTCTCAGGGGAGGTTGTTTGGCTGCTTCAGCCACGGC  170

Query  642   CATGGCGGTGATGCTGACTGCTACTGAGGAGGGAGTGGCAGACATCTACGGCTTCAAGCT  701
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  171   CATGGCGGTGATGCTGACCGCTACTGAGGAGGGAGTGGCAGACATCTACGGCTTCAAGCT  230

Query  702   CACTCTCTCCTCCAACTGGTCTTTCTCTCCCTCCTACCAGTATGTGGTGGGGGCATGTAC  761
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  231   CACTCTCTCCTCCAACTGGTCTTTCTCTCCCTCCTACCAGTATGTGGTGGGGGCATGCGC  290

Query  762   AGGGACCGTGCTCTACTCCCTGTTCCAGCTCTGTCTCGGTGTTTACAGACTCCTCACCGG  821
             |||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct  291   AGGGACCGTGCTCTACTCCCTGTTACAGCTCTGCCTCGGTGTTTACAGACTCGTCACCGG  350

Query  822   ATCTCCCATCACACCCTCCCGCTTCCAAGCTTGGCTTTGCTTCACCTCTGATCAGCTCTT  881
             |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  351   ATCTCCCATCACGCCTTCCCGCTTCCAAGCTTGGCTTTGCTTCACCTCCGATCAGCTCTT  410

Query  882   TGGTTATTTGATGATGAGCGCTGGATCAGCCGGTTCTGGAGTTACCAACCTCAACAAAAC  941
             | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  411   TTGTTATTTGATGATGAGCGCTGGATCAGCCGGTTCCGGAGTTACCAACCTCAACAAAAC  470

Query  942   CGGCATCAGGCACACTCCTCTCCCCGACTTCTGCAAGACCCTTTCTTCTTTCTGCAATCA  1001
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471   CGGCATCAGGCACACTCCTCTCCCCGACTTCTGCAAGACCCTTTCTTCTTTCTGCAATCA  530

Query  1002  TGTGGCCCTGtctctcctcttagtcttcctctccttcatcttcctggcttcctcttcctt  1061
             ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  531   TGTCGCCCTGTCTCTCCTCTTAGTCTTCCTCTCCTTCATCTTCCTCGCTTCCTCTTCCTT  590

Query  1062  cttcactgtccttgtgctctccactccCTA  1091
             ||| ||||||||||||||||||||||||||
Sbjct  591   CTTTACTGTCCTTGTGCTCTCCACTCCCTA  620


> AT1G79770.1 | Symbols:  | Protein of unknown function (DUF1677) 
| chr1:30014361-30015078 FORWARD LENGTH=718
Length=718

 Score =  725 bits (392),  Expect = 0.0
 Identities = 419/431 (97%), Gaps = 5/431 (1%)
 Strand=Plus/Plus

Query  1    ATGGCACCAAACGGGAGAAGGAAGAGCGTGAGCGGAAGCTTGGTGAAGCCGCCGCCACCA  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||| | || || 
Sbjct  11   ATGGCAGCAAACGGGAGAAGGAAGAGCGTGAGCGGAAGCTTGGTGAAGCCG-C-CC-CCG  67

Query  61   CCAAAGCTAGCGAAAGAGTCACTGCATAGGTCCCTGTCAGACATATCGTTGGATT-TCCA  119
            |||||| ||| |||| |||||||||||||||||||||||||||||||| |||||| | ||
Sbjct  68   CCAAAGGTAGGGAAAAAGTCACTGCATAGGTCCCTGTCAGACATATCGCTGGATTAT-CA  126

Query  120  CAGAGAAGAAGAGAAAGGACTGGGGACGATAGTGGAGGTAGAGAAGGCAAAGTGCGAGTG  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  CAGAGAAGAAGAGAAAGGACTGGGGACGATAGTGGAGGTAGAGAAGGCAAAGTGCGAGTG  186

Query  180  CTGCGGGATGAGGGAGGAGTGCACGATGGAGTACATAGAGAGGGTGAGGGAGAAGTTCTT  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  187  CTGCGGGATGAGGGAGGAGTGCACGATGGAGTACATAGAGAGGGTGAGGGAGAAGTTCTT  246

Query  240  TGGGAAGTGGATATGCGGACTGTGCTCAGAGGCGGTGAAGGAGGAGAGGGATAAGAGGGA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  TGGGAAGTGGATATGCGGACTGTGCTCAGAGGCGGTGAAGGAGGAGAGGGATAAGAGGGA  306

Query  300  TGAGGAAGGGCTAGAAGGGGCCTTGAAGGAGCACATGAGCGCCTGCCTCAGGTTCAACAA  359
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  AGAGGAAGGGCTAGAAGGGGCCTTGAAGGAGCACATGAGCGCCTGCCTCAGGTTCAACAA  366

Query  360  GCTCGGGAGGGAGTATCCGGCTCTCTTCCAAGCTGATGCCATGAGAGATATGCTCCGGAG  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  GCTCGGGAGGGAGTATCCGGCTCTCTTCCAAGCTGATGCCATGAGAGATATGCTCCGGAG  426

Query  420  AAGCACGAGGG  430
            |||||||||||
Sbjct  427  AAGCACGAGGG  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53513780970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5