BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316997

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01960.1 | Symbols:  | unknown protein; Has 13 Blast hits to...   676    0.0  


> AT3G01960.1 | Symbols:  | unknown protein; Has 13 Blast hits 
to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:324581-325087 REVERSE LENGTH=417
Length=417

 Score =  676 bits (366),  Expect = 0.0
 Identities = 401/418 (96%), Gaps = 2/418 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATGAACAGAAGGAGATCAAGAGGGTTCATGATAGCTAGGCTAATACCCTTTTGC  60
            ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  1    ATGGAGATGAACAGAAGGAGATCAAGAGGGTTCATGATAGCTAAGCTAATGCCCTTTTGC  60

Query  61   AAAGCTGTGAAATCTCCAACTCCTTCCCAAGACCTTTATAATAATGTTCATTACACTTCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAAGCTGTGAAATCTCCAACTCCTTCCCAAGACCTTTATAATAATGTTCATTACACTTCT  120

Query  121  TCCACTACGACTTCCTACGCTCGTCAACCTGATTTCAACAACTACGTAACTGCCACTTCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  TCCACTACGACTTCCTACGCTCGTCAACCTGATTTCAACAACTACGTAACTGCCACTACG  180

Query  181  CCTATCCCTCCTAAAGTTAGCTTCCTCCTTCAACCATCCGTGGCTCCTGAGGGTAAGGAT  240
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  181  CCTCTCCCTCCTAAAGTTAGCTTCCTCCTTCAACCATCCTTGGCTCCTGAGGGTAAGGAT  240

Query  241  ATGGAAAAGAAGCTGAACATGATGGCAGAGAAGCTGATCGGCAGAGGGATTAACGGTGTG  300
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  241  ATGGAAAAGAAGCTGAACATGATGGCAGAGAAGCTGATCGGCAGAGGTATTAACGGAGTG  300

Query  301  AACGACTGCGTTGACGCTAGAGCCGCTTCTTACATCTCTTCGGTTAGAGAAAGGTTTAAG  360
             ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct  301  GACGACTGCGTTGACGCTAGAGCCGCTTCTTATATCTCTTCGGTTCGAGAGAGGTTTAAG  360

Query  361  GCGGACCACTGT-GATCAGAAACTGACGACTGTTATTAGCTTAGATGATGAAGATTGA  417
            |||||||| | | | | ||||||||||||||||||||||||||||||||||| |||||
Sbjct  361  GCGGACCAATATTG-TGAGAAACTGACGACTGTTATTAGCTTAGATGATGAAAATTGA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5