BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317012
Length=2772
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01810.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 4333 0.0
> AT3G01810.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: nucleolar protein gar2-related (TAIR:AT2G42320.2);
Has 1327 Blast hits to 470 proteins in 132 species: Archae
- 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants -
114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).
| chr3:288569-292755 FORWARD LENGTH=3182
Length=3182
Score = 4333 bits (2346), Expect = 0.0
Identities = 2636/2777 (95%), Gaps = 16/2777 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTGGGTTTAAGCTCAAAGAACAACAGAAGATGCTCATCGGTACAAGTTGATTAC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 219 ATGGTTTTGGGTTTAAGCTCAAAG---AACAGAAGATGCTCATCGGTACAAGTTGATTAC 275
Query 61 TTTATCCACATTCATGACATCAAGCCTTGGCCTCCTTCTCAGTCCCTTCGATCCCTTCGC 120
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 276 CTGATCCACATTCATGACATCAAGCCTTGGCCTCCTTCTCAGTCCCTTCGATCTCTTCGC 335
Query 121 TCTGTTCTTATCCAATGGGAGAATGGTGACCGCAATTCCGGTACCACTACTGTTGTTGCT 180
|||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 336 TCTGTTGTTATCCAATGGGAGAATGGTGACCGCAATTCTGGTACCACTTCTGTTGTTGCT 395
Query 181 CCTTCTCTTGGTTCCGTCATTGGCGAAGGCAAAATCGAGTTCAACGAATCTTTTAAGCTT 240
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 396 CCTTCTCTTGGTTCTGTCATTGGCGAAGGCAAAATCGAGTTCAACGAATCATTTAAGCTT 455
Query 241 CCCCTCACCTTGCTGAAAGATGCCTCTGCTCGGAACAAAGGTGGTGGTGATCTCTTCTTC 300
|||||||||||| ||||||||| |||||||||| |||| ||||||||| ||||||||
Sbjct 456 CCCCTCACCTTGTTGAAAGATGTCTCTGCTCGGGGCAAA---GGTGGTGATGTCTTCTTC 512
Query 301 AAGAACGTCTTAGAGCTCAACTTATACGAGCCTCGCAGAGAGAAAACACACCAGCTTTTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 513 AAGAACGTCTTAGAGCTCAACTTATACGAGCCTCGCAGAGAGAAAACACATCAGCTTTTG 572
Query 361 GCTACTGCCACCATAGATTTGGCCGTCTATGGTATTGTCAAAGAAAGTTTCAGCTTAACT 420
|||||||||||||| |||||||| || || ||| |||||||||||||||||||||| |||
Sbjct 573 GCTACTGCCACCATTGATTTGGCTGTGTACGGTGTTGTCAAAGAAAGTTTCAGCTTGACT 632
Query 421 GCTCAAATGAACAGTAAAAGAAGCTACCGCAATGCCACTCAGCCTGTTCTGTACCTCACT 480
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 633 GCTCAAATGAACAGTAAACGAAGCTACCGGAATGCCACTCAGCCTGTTCTGTACCTCACT 692
Query 481 ATTCAACCCGTTGGTAGACGCAGGGCCAGTTCTTCTTCATCTATCAACAGCTTCAAGGAT 540
|||||||||||| |||||||| ||||||| |||||||||||| |||||||| ||||||
Sbjct 693 ATTCAACCCGTTAGTAGACGCCGGGCCAG---TTCTTCATCTATGAACAGCTTGAAGGAT 749
Query 541 GAAACCAAGAATGGCGGTGAGTCTGTTTCTGCCTTGATGAATGAGGAATACTATAAGGAA 600
||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 750 GAAGCCAAGAATGGGGGTGAATCTGTTTCTGCCTTGATGAATGAGGAATACTATAAGGAA 809
Query 601 GCTGAGATTGCTTCCATCACTGACGACGACATTTCCTCCCACTCCTCCTTGACAGTCTCT 660
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 810 GCTGAGATTGCTTCCATCACAGACGACGACATTTCCTCCCACTCCTCCTTGACAGTCTCA 869
Query 661 TCTTCTACTTTAGAGTCTAATGGTGGTTTTTCTGTGCGAACCGAAGAGGAAGAACATGAG 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TCTTCAACTTTAGAGTCTAATGGTGGTTTTTCTGTGCGAACCGAAGAGGAAGAACATGAG 929
Query 721 AGAATAAACAAGGATCCCAGAGGAAATGGCCACGAGAGATCACAATCAGTGTCAGAGACC 780
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 930 CGAATAAACAAGAATCCCAGAGGGAATGGCCACGAGAGATCAAAATCAGTGTCAGAGAGC 989
Query 781 AGACAAGGAGAAATTTCTGACCAGATTCCATCACGTTCCAT-GTCAGTAGATCTATCTTC 839
|||||| || ||||| ||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 990 AGACAAAGACAAATTGCTGACCAGATTCCGTCACGTTCC-TCGTCAGTAGATCTATCTTC 1048
Query 840 TGTGTTTTATCTCCCAGG-GGACATTCCTGATTCTACACCCAACACTTCTGTGTCTGGGC 898
||||||| ||||||| || || |||| |||||||| |||||||||||||| |||||||||
Sbjct 1049 TGTGTTTCATCTCCC-GGAGGGCATTTCTGATTCTGCACCCAACACTTCTTTGTCTGGGC 1107
Query 899 TGGAGGACTGTGCTAATGTGTTTAGAACTGATACCAATGAGAGCTCTAAGCTGGTAAGTA 958
||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 1108 TGGAGCACTGTGCTAATGTGTTTATAACTGATACCAATGAGAGCTCGAAGCTGGCAAGTA 1167
Query 959 ACAGTCAGCAAAATAACGGAGATACCAAGTCTATGCCTTTACAGATTGACAATCTCTCTG 1018
|| ||||||| ||||| ||||| |||||||| |||||||||| ||||||||||| || |
Sbjct 1168 ACGGTCAGCACAATAATGGAGAGGCCAAGTCTGTGCCTTTACAAATTGACAATCTTTCGG 1227
Query 1019 -AGA--CTTCGCCTCGAGCCTCTGAGAATAGTCAAGGTTTGATCAGTGATCAGGAACCAG 1075
| | |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1228 AAAATGCTTCGCCTCGAGCCTCTGTGAATAGTCAAGATTTGACCAGTGATCAGGAACCAG 1287
Query 1076 AGAGTATAGTTGAGAAATCAAGAAAGGTGAAGTCTGTTCGATCATCCCTGGATATTAACC 1135
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1288 AGAGTATAGTTGAGAAATCAAGAAAGGTGAAGTCTGTTCGATCATCCTTGGATATTAACC 1347
Query 1136 GGAGCAATAGCCGGTTGAGTTTATCCAGTGATAGAAAAGAAGCTAAGGTGTATCCAAAGT 1195
|||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |
Sbjct 1348 GGAGCAATAGCCGGTTGAGTTTATTCAGTGAAAGAAAAGAGGCTAAGGTGTATCCAAATT 1407
Query 1196 CTACACACGACACAACTTTGGAGAACAAAATCAAGAACTTGGAAAGTAGAGTACAGAAGC 1255
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1408 CTACACACGACACAACTTTGGAGAGCAAAATCAAGAACTTGGAAAGTAGAGTAAAGAAGC 1467
Query 1256 TTGAGGGTGAGTTACGTGAGGCTGCAGCCATTGAAGCATCTCTCTACTCCGTGGTTGCAG 1315
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1468 TTGAGGGTGAGTTATGCGAGGCTGCAGCCATTGAAGCAGCTCTCTACTCCGTGGTTGCAG 1527
Query 1316 AGCATGGAAGTTCATCAAGTAAAGTCCATGCACCTGCTAGACGTCTTTTGAGGCTGTATC 1375
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1528 AGCATGGAAGTTCATCAAGTAAAGTCCATGCGCCTGCTAGACGTCTTTTGAGGCTGTATC 1587
Query 1376 TTCATGCTTGTAGAGAAACCCATCTCTCAAGAAGAGCCAATGCAGCTAAAAGTGCTGTCT 1435
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1588 TTCATGCTTGTAGAGAAACCCATCTCTCAAGAAGAGCCAATGCAGCTGAAAGTGCTGTCT 1647
Query 1436 CCGGGTTAGTTCTTGTTGCCAAAGCGTGTGGAAACGATGTCCCCAGATTGACATTTTGGC 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 CCGGGTTAGTTCTTGTTGCCAAAGCGTGTGGAAACGATGTCCCCAGATTGACATTTTGGT 1707
Query 1496 TGTCAAACACTATTGTTCTGAGGACAATCATTAGTGATACTAGTGCAGAAGAAGAACTGC 1555
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1708 TGTCAAACACTATCGTTCTGAGGACAATCATTAGTGATACTAGTGCAGAAGAGGAACTGC 1767
Query 1556 CTGTTTCGGCTGGTCCTGGACCAAGGAAACAGAAGGTTGAAAGAGAAACTGAAAAACGAT 1615
||||||| ||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 1768 CTGTTTCTGCTGGTCCTGGACCAAGAAAACAGAAGGCTGAAAGAGAAACCGAGAAACGAT 1827
Query 1616 CGTCCTTGAAGTGGAAAGATTCCCCTTTGAGCAAAAAGGACATTGAGAGTTTTGGTGCCT 1675
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1828 CGTCCTTGAAGTGGAAAGATTCCCCTTTGAGCAAAAAGGACATTAAGAGTTTTGGTGCCT 1887
Query 1676 GGGATGACCCTGTAACTTTCATAACAGCGCTTGAGAAGGTGGAAGCTTGGATCTTCTCAC 1735
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1888 GGGATGACCCTGTAACTTTCATAACAGCGCTTGAAAAGGTCGAAGCTTGGATCTTCTCAC 1947
Query 1736 GCGTCGTAGAATCAATTTGGTGGCAGACTTTGACACCGCGTATGCAGTCTTCAGCAGCAT 1795
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1948 GCGTCGTAGAATCAATTTGGTGGCAGACTTTGACACCACGTATGCAGTCTTCGGCAGCAT 2007
Query 1796 CAACTAGAGAGTTTGATAAAGCCAATGGCACTGCATCAAAGAAAAATTTTGGTAGGACGC 1855
||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
Sbjct 2008 CAACTAGAGAGTTTGATAAAGGAAATGGCTCTGCATCAAAGAAAACTTTTGGTAGGACTC 2067
Query 1856 CGAGTTCTATGAACCAAGAACAAGGTGATTTCTCATTAGAGCTTTGGAAAAAGGCATTCA 1915
||||| || ||||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct 2068 CGAGTAGTACGAACCAAGAACTAGGTGACTTCTCATTAGAGCTTTGGAAAAAGGCTTTCA 2127
Query 1916 GGGAGGCACACGAACGTTTATGCCCTCTGCGAGGTAGTGGGCATGAATGTGGCTGCTTAC 1975
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2128 GGGAGGCACACGAACGTTTATGCCCTCTGCGAGGTAGTGGGCATGAATGTGGCTGCTTGC 2187
Query 1976 CCGTGCCTGCGCGTCTGATAATGGAACAGTGTGTGGCTCGGCTAGATGTTGCTATGTTCA 2035
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 CCATACCTGCGCGTCTGATAATGGAACAGTGTGTGGCTCGGCTAGATGTTGCTATGTTCA 2247
Query 2036 ATGCTATCCTTCGTGATTCTGATGACAATTTCCCAACGGACCCTGTATCTGATCCCATTG 2095
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2248 ATGCTATCCTTCGTGATTCTGATGACAATTTCCCAACAGACCCTGTATCTGATCCCATTG 2307
Query 2096 CAGATTTGAGAGTCTTGCCAATTCCTTCTACAACATCAAGTTTTGGTTCTGGTGCCCAGC 2155
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2308 CAGACTTGAGAGTCTTGCCAATTCCTTCTAGAACATCAAGTTTTGGTTCTGGTGCCCAGC 2367
Query 2156 TGAAAAACTCGATAGGAAACTGGTCAAGGTGGCTCACTGATCTATTCGGCATTGATGACG 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 TGAAAAACTCGATAGGAAACTGGTCAAGGTGGCTCACTGATCTATTCGGCATTGATGACG 2427
Query 2216 AAGATGATGACAGCAGCGATGAGAATATCTATGTTGATAGATCGTTCAAGACATTCAATC 2275
||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 2428 AAGATGATGACAGCAGCGATGAGAATAGCTATGTTGAAAAATCGTTCAAGACATTCAATC 2487
Query 2276 TTCTCAAGGCGTTAAGCGATCTAATGATGCTTCCAAAAGATATGCTCCTCCACAGTTCTG 2335
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2488 TTCTCAAGGCGTTAAGCGATCTAATGATGCTTCCAAAAGATATGCTCCTCAACAGTTCTG 2547
Query 2336 TGAGAAAAGAGGTTTGCCCGATGTTTGGTTCCCCGTTGATCAAGAGAGTGTTGAATAATT 2395
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 2548 TGAGAAAAGAGGTTTGCCCGATGTTTGGTGCCCCGTTGATTAAGAGAGTGTTGAATAATT 2607
Query 2396 TTGTGCCAGATGAATTTTGCCCTGACCCAGTTCCTGATGCTGTACTTAAATCTCTTGAAT 2455
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2608 TTGTCCCAGATGAGTTTTGCCCTGACCCAGTTCCTGATGCTGTACTGAAATCTCTTGAAT 2667
Query 2456 CCGAGGAGGAAGCTGAGAAGAGTATGATCACAAGCTATCCGTGCACTGCACCTCCCCCAG 2515
||||||| ||||||||||||||||| |||||||||||||| |||||||||||| | ||||
Sbjct 2668 CCGAGGAAGAAGCTGAGAAGAGTATCATCACAAGCTATCCATGCACTGCACCTTCTCCAG 2727
Query 2516 TGTACTCTCCACCTTCACGGACTTCAATCTCCACCATCATTGGAGACTTTGGACAGCCTC 2575
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2728 TGTACTGTCCACCTTCACGGACTTCAATCTCCACCATCATTGGAAACTTTGGACAGCCTC 2787
Query 2576 AAGCGCCGCAGTTAAGCAGAATCAGGTCTTCAATTACAAGAAAAGCGTACACAAGCGATG 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2788 AAGCGCCGCAGTTAAGCAGAATCAGGTCTTCAATTACAAGAAAAGCGTACACAAGCGATG 2847
Query 2636 ACGAGCTTGATGAGCTGAGTTCACCGTTGGCTGTTGTTGTTCTTCAACAAGAAGGTTCTA 2695
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2848 ACGAGCTTGATGAGCTGAGTTCACCGTTGGCTGTTGTTGTTCTTCAACAAGCAGGTTCTA 2907
Query 2696 AGAAGATCAATAATGGTGGTGCAGATGAGATAGTCAGGTATCAACTTCTCAGGGAGTGTT 2755
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 2908 AGAAGATCAATAATGGTGATGCAGATGAGACAATCAGGTATCAACTTCTCAGGGAGTGTT 2967
Query 2756 GGATGAACGGCGAATGA 2772
|||||||||||||||||
Sbjct 2968 GGATGAACGGCGAATGA 2984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137708258535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5