BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317013
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01800.1 | Symbols: | Ribosome recycling factor | chr3:2858... 826 0.0
> AT3G01800.1 | Symbols: | Ribosome recycling factor | chr3:285871-287950
FORWARD LENGTH=1360
Length=1360
Score = 826 bits (447), Expect = 0.0
Identities = 523/558 (94%), Gaps = 12/558 (2%)
Strand=Plus/Plus
Query 1 ATGTTAATGAGACGAGCTCTATCTAGTCGTAACGCGATTGGGTTTCTCAGAAGAAGCTCC 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 ATGTTCGTGAGACGAGCTCTATCTAGTCGTAACGCGATTGGGTTTCTCAGAAGAAGCTCC 218
Query 61 GTTGTTGTTGTTCAATCTCGTGATTTCTCCATCATTTCTTCGCCCAA--TC-TGATGATG 117
||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||
Sbjct 219 ---GTTGTTGTTCAATCTCGTGATTTCTCCTTCATTTCTTCACCCAATCTCATGATGATG 275
Query 118 GTAGGCCGGGATTTGCAATTCGATATGTCCATGCCCGATTTCCTCAGAGATACTCGTCGA 177
| |||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 276 GGAGGCCGAGATCTGCAATTCGATTTGTCCATGCCCGATTTCCTCAGAGATTCTCGTCGA 335
Query 178 GGCTTCGCAAAAGGCAAAAAATCAAAGGGCGATT------CAGGGATGGTCGACGCAGCT 231
||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 336 GGCTTTGCAAAAGGCAAAAAATCAAAGGACGATTCAGGAACAGGGATGGTCGACGCAGCT 395
Query 232 CCAGATATCGGGCCTACCGTGAAAGCAGCAGCCTCTTCTCAAATGGAGGCAGCCATTGAT 291
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CCAGATATCGGACCTACCGTGAAAGCAGCAGCCTCTTCTCAAATGGAGGCAGCCATTGAT 455
Query 292 GCATTGTCGCGTGATTTAACTAAATTAAGAACCGGTCGAGCAGCACCAGGAATGCTTGAT 351
|||||||| || ||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 456 GCATTGTCCCGGGATTTAACTAAATTAAGAACCGGAAGAGCCGCTCCAGGAATGCTTGAT 515
Query 352 CATATTGTTGTTGAAACGGGGGGAGTAAAGATGCCACTCAATCACTTAGCTTTGGTCTCT 411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 516 CATATTGTTGTTGAAACGGGAGGAGTAAAGATGCCACTCAATCACTTAGCTTTGGTCTCT 575
Query 412 GTCTTGGATCCTAAGACTCTCTCTGTCAATCCATATGATCCCGATACGGTCAAAGAACTT 471
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 576 GTCTTGGATCCTAAGACTCTCTCTGTCAATCCTTATGATCCCGATACGGTCAAAGAACTT 635
Query 472 GAGAAAGCAATAGTTGCGTCTCCATTAGGATTAAACCCGAAACTGGATGGGCAACGACTG 531
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 636 GAGAAAGCAATAGTCGCGTCGCCATTAGGATTAAACCCGAAACTGGATGGGCAACGACTG 695
Query 532 GTCGCATCAATCCCAGCA 549
|||||||| |||||||||
Sbjct 696 GTCGCATCTATCCCAGCA 713
Score = 265 bits (143), Expect = 5e-70
Identities = 149/152 (98%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 566 AGGCACTGGACACGATAAAGAAAGCAGGCTCGAGCCTACCAAAGGATGAAGTAAAAAGAC 625
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 802 AGGCACTGGACACGATAAAGAAAGCAGGCTCGAGTCTACCAAAGGATGAAGTAAAAAGAC 861
Query 626 TGGAGAAGGAAGTAGATGAGTTGACGAAGAAGTTTGTCAAGTCAGCAGAGGACATGTGCA 685
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 862 TGGAGAAGGAAGTAGATGAGTTGACGAAGAAATTTGTGAAGTCAGCAGAGGACATGTGCA 921
Query 686 AGTCCAAAGAGAAAGAGATCACCGAAGCCTGA 717
||||||||||||||||||||||||||||||||
Sbjct 922 AGTCCAAAGAGAAAGAGATCACCGAAGCCTGA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5