BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317048
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01420.1 | Symbols: ALPHA-DOX1, DOX1, DIOX1, PADOX-1 | Perox... 3001 0.0
> AT3G01420.1 | Symbols: ALPHA-DOX1, DOX1, DIOX1, PADOX-1 | Peroxidase
superfamily protein | chr3:159466-162837 REVERSE LENGTH=2254
Length=2254
Score = 3001 bits (1625), Expect = 0.0
Identities = 1823/1921 (95%), Gaps = 4/1921 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGCAATTACTTCTCTAATCTCTTCTGTTTTGCTTAAATTTATCCACGAAGACTTT 60
||||||| ||||||||| |||||||||||| ||||||||||||| |||||| |||||||
Sbjct 112 ATGAAAGTAATTACTTCCCTAATCTCTTCTATTTTGCTTAAATTCATCCACAAAGACTTC 171
Query 61 CATGAGATTTACT-CAAGAATGTCCCTCCTCGATCGTTTTCTACTTCTTATCGTGCATGC 119
||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 172 CATGAGATTTA-TGCAAGAATGTCCCTCCTCGATCGGTTTCTTCTTCTTATCGTGCATGG 230
Query 120 AGTGGATAAGATGGTTCCATGGCATAAGCTTCCGGTTTTCTTGGGTTTAGCCTATCTTGA 179
||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct 231 AGTGGATAAGATGGTTCCATGGCATAAGCTTCCAGTATTCTTGGGGTTAACCTATCTTGA 290
Query 180 AGTACGTAGACATCTTCACCAAGAATACAATCTTATCAACGTGGGTCAAAGTCCGGTTGG 239
|||||| ||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||
Sbjct 291 AGTACGAAGACATCTTCACCAACAATACAATCTTCTCAACGTCGGTCAAACTCCGACTGG 350
Query 240 GACCCGGTTTGATCCTGCTAATTATCCGTACCGGACTGCTGACGGAAAGTTCAATGATCC 299
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 351 GATCCGGTTTGATCCTGCTAATTATCCGTACCGGACTGCTGACGGAAAATTCAATGATCC 410
Query 300 GTTTAATGAAGGCGTCGGCAGTCAAAATAGCTTCTTCGGAAGAAATTGTCCCCCCGTCGA 359
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 411 CTTTAATGAAGGCGTCGGCAGTCAAAATAGTTTTTTCGGGAGAAATTGTCCCCCCGTCGA 470
Query 360 TCAGATAA-CAAAGTTACTGAGGCCAGACCCCATGGTGGTGGCGTCAAAACTATTAGGAA 418
||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 471 TCAGA-AATCAAAGTTACGGAGGCCAGACCCCATGGTGGTGGCGACAAAACTATTAGGAA 529
Query 419 GGAGAAAGTTTATTGACACAGGAAAACAATTCAATATGATCGCAGCTTCTTGGATTCAAT 478
||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 530 GGAAAAAGTTTATCGACACGGGAAAACAATTCAACATGATTGCAGCTTCTTGGATTCAGT 589
Query 479 TCATGATCCATGATTGGATTGATCATCTTGAAGATACTCGCCAAATCGAGCTTGTGGCTC 538
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||
Sbjct 590 TCATGATCCATGATTGGATTGATCATCTTGAAGACACTCACCAAATCGAACTTGTCGCTC 649
Query 539 CGAAAGAAGTAGCGAACAAGTGTCCCTTAAGCTCCTTTAGCTTCTTCAAGACAAAGGAAG 598
| ||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 650 CAAAAGAAGTAGCGAGCAAGTGTCCCTTAAGCTCCTTTAGGTTCTTAAAGACCAAGGAAG 709
Query 599 TCCCTACCGGTTTCTTCGAAATCAAGACTGGTTCGCTAAATATCCGTACACCTTGGTGGG 658
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 710 TCCCTACCGGTTTCTTCGAAATCAAGACTGGCTCGCAAAATATCCGTACACCTTGGTGGG 769
Query 659 ATTCGAGCGTCATCTATGGAAGCAACTCGAAAATATTGGATAGAGTAAGAACTTACAAAG 718
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 ATTCGAGCGTCATCTATGGAAGCAACTCGAAAACATTGGATAGAGTAAGAACTTACAAAG 829
Query 719 ATGGGAAACTGAAGATATCGGAGGAGACGGGTCTCCTTCTCCATGACGAAGACGGGTTAG 778
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 830 ACGGGAAACTAAAGATATCGGAGGAGACGGGTCTCCTTCTCCATGACGAAGACGGTTTAG 889
Query 779 CTATCTCCGGCGATATTCGTAACAGTTGGGTTGGCGTCTCCGCTTTGCAAGCTCTCTTCA 838
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 890 CTATCTCCGGCGACATTCGTAACAGTTGGGCTGGTGTCTCCGCTTTGCAAGCTCTCTTCA 949
Query 839 TCAAAGAGCACAACGCTGTATGCGACGCCCTCAAGGATGAGGATAAGGATTTGGAAGACG 898
|||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 950 TCAAAGAGCACAACGCCGTATGCGACGCCCTCAAGGATGAGGATGATGATTTGGAAGACG 1009
Query 899 AAGATTTGTACCGGTACGCGAGGCTAGTGACTTCAGCGGTGATAGCCAAGATTCACACCA 958
||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 1010 AAGATTTGTACCGGTACGCTAGGCTAGTGACCTCAGCCGTGGTAGCCAAGATTCACACCA 1069
Query 959 TAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGAGAGCAAATT 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1070 TAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGCGAGCAAATT 1129
Query 1019 GGTACGGACTACTAGGAAAGAAGTTTAAAGATTCTTTCGGACATGCAGGAAGTTCGATCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1130 GGTACGGACTACTAGGAAAGAAGTTTAAAGATTCTTTCGGACATGCAGGCAGTTCGATCT 1189
Query 1079 TGGGAGGTGTCGTGGGAATGAAGAAACCGCAAAATCATGGGGTCCCTTACTCTCTAACCG 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1190 TGGGAGGTGTCGTGGGAATGAAGAAACCGCAAAATCATGGGGTCCCTTACTCTCTAACTG 1249
Query 1139 AGGATTTCACTAGCGTCTATCGAATGCACTCTCTCTTACCTGATCATCTCCAGATGCGTG 1198
| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||
Sbjct 1250 AAGATTTCACCAGCGTCTATCGAATGCATTCTCTCTTACCTGATCAACTCCATATACTTG 1309
Query 1199 ACATTGATGATGTATCAGGAACTAATAAATCACTACCGTTGATTAAAGAGATTTCTATGG 1258
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1310 ACATTGATGATGTACCAGGAACTAATAAATCACTACCGTTGATTCAAGAGATTTCTATGA 1369
Query 1259 GAAATTTGATTGGTCGTAAGGGAGAAGAAACCATGTCTCAGATTGGATTCACTAAGCTAA 1318
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1370 GAGATTTGATTGGTCGCAAGGGAGAAGAAACCATGTCTCACATTGGATTCACTAAGCTAA 1429
Query 1319 TGGTCTCAATGGGTCACCAAGCAAGTGGTGCCCTTGAACTGATGAATTATCCAATGTGGT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1430 TGGTCTCAATGGGTCACCAAGCAAGTGGTGCCCTTGAACTGATGAATTATCCGATGTGGT 1489
Query 1379 TAAGAGACATTGTTCCCCAAGACCCCAACGGCCAAGATCGTCCGGACCACGTCGACTTAG 1438
||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 1490 TAAGAGACATTGTTCCCCACGACCCCAACGGCCAAGCTCGTCCAGACCACGTCGACTTAG 1549
Query 1439 CTGCTTTAGAGATCTATAGGGACAGGGAGAGGAACGTCCCACGGTACAACGATTTCAGGA 1498
|||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1550 CTGCTTTAGAGATCTACAGGGACAGGGAGAGGAGCGTCCCACGGTACAACGAGTTCAGGA 1609
Query 1499 GATCTATGTTTATGATTCCGATAACCAAGTGGGAAGATCTAACGGATGATGAGGAAGCTA 1558
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1610 GATCTATGTTTATGATTCCGATAACCAAGTGGGAAGATCTAACGGAGGATGAGGAAGCTA 1669
Query 1559 TTAAAGTGTTGGATGACGTGTACGATGGTGATGTGGAGGAGCTTGATCTTCTCGTGGGAC 1618
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TTGAAGTGTTGGATGACGTGTACGATGGTGATGTGGAGGAGCTTGATCTTCTCGTGGGAC 1729
Query 1619 TTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCA 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCC 1789
Query 1679 TCATCATGGCCACAAGGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TCATCATGGCCACAAGGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAA 1849
Query 1739 CGATTTATTCGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGATGTGT 1798
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CGATTTACACGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGATGTGA 1909
Query 1799 TTGATCGTCATTATCCTGAAATGACTGATAAATGGATGAACTCTGAAAGTGCATTTTCGG 1858
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1910 TTGATCGTCATTATCCTGATATGACAGACAAATGGATGAACTCTGAAAGTGCATTTTCAG 1969
Query 1859 TATGGGATTCACCTCCAGTTACCAAAAATCCAATCCCTCTCTATCTCCGAATTCCTTCTT 1918
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1970 TATGGGATTCACCTCCACTTACCAAAAATCCAATCCCTCTCTATCTCCGAATTCCCTCTT 2029
Query 1919 A 1919
|
Sbjct 2030 A 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5